Last updated on 2024-06-21 15:53:22 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CohortCharacteristics | 8 | 5 | |
| DrugUtilisation | 2 | 11 | |
| omopgenerics | 2 | 11 | |
| PatientProfiles | 13 |
Current CRAN status: NOTE: 8, OK: 5
Version: 0.2.1
Check: installed package size
Result: NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
doc 5.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 2, OK: 11
Version: 0.6.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘a01_introCreateCohort.Rmd’
...
> cdm <- mockDrugUtilisation(numberIndividual = 200)
> conceptSet_json <- codesFromConceptSet(here::here("inst/Concept"),
+ cdm)
When sourcing ‘a01_introCreateCohort.R’:
Error: Invalid path:
/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpAcS3f3/filee1b79ed7cde/vignettes/inst/Concept
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘a01_introCreateCohort.Rmd’ using ‘UTF-8’... failed
‘a02_scalingOfInstantiateCohorts.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘a03_addIndications-example.Rmd’ using ‘UTF-8’... [20s/21s] OK
‘a04_addDrugInfo.Rmd’ using ‘UTF-8’... [33s/32s] OK
‘a05_treatmentDiscontinuation.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘a06_treatmentSummary.Rmd’ using ‘UTF-8’... [5s/5s] OK
‘a07_characteriseACohort.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘routePatternDose.Rmd’ using ‘UTF-8’... [14s/14s] OK
Flavor: r-oldrel-macos-arm64
Version: 0.6.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘a01_introCreateCohort.Rmd’
...
> cdm <- mockDrugUtilisation(numberIndividual = 200)
> conceptSet_json <- codesFromConceptSet(here::here("inst/Concept"),
+ cdm)
When sourcing ‘a01_introCreateCohort.R’:
Error: Invalid path:
/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpH7z4ec/file17a6376f72e3f/vignettes/inst/Concept
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘a01_introCreateCohort.Rmd’ using ‘UTF-8’... failed
‘a02_scalingOfInstantiateCohorts.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘a03_addIndications-example.Rmd’ using ‘UTF-8’... [28s/29s] OK
‘a04_addDrugInfo.Rmd’ using ‘UTF-8’... [69s/68s] OK
‘a05_treatmentDiscontinuation.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘a06_treatmentSummary.Rmd’ using ‘UTF-8’... [10s/10s] OK
‘a07_characteriseACohort.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘routePatternDose.Rmd’ using ‘UTF-8’... [26s/26s] OK
Flavor: r-oldrel-macos-x86_64
Current CRAN status: ERROR: 2, OK: 11
Version: 0.2.2
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘a02_concept_set.Rmd’
...
> condition_codes <- list(c(201820, 4087682, 3655269))
> newCodelist(condition_codes)
When sourcing ‘a02_concept_set.R’:
Error: ! `x` must be named.
`x` must be a list with objects of class numeric and integer; it can not
contain NA; it has to be named; it can not be NULL.
Execution halted
‘a01_cdm_reference.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘a02_concept_set.Rmd’ using ‘UTF-8’... failed
‘a03_cohort_table.Rmd’ using ‘UTF-8’... [4s/5s] OK
‘a04_summarised_result.Rmd’ using ‘UTF-8’... [1s/2s] OK
‘reexport.Rmd’ using ‘UTF-8’... [0s/0s] OK
Flavor: r-oldrel-macos-arm64
Version: 0.2.2
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘a02_concept_set.Rmd’
...
> condition_codes <- list(c(201820, 4087682, 3655269))
> newCodelist(condition_codes)
When sourcing ‘a02_concept_set.R’:
Error: ! `x` must be named.
`x` must be a list with objects of class numeric and integer; it can not
contain NA; it has to be named; it can not be NULL.
Execution halted
‘a01_cdm_reference.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘a02_concept_set.Rmd’ using ‘UTF-8’... failed
‘a03_cohort_table.Rmd’ using ‘UTF-8’... [6s/8s] OK
‘a04_summarised_result.Rmd’ using ‘UTF-8’... [2s/3s] OK
‘reexport.Rmd’ using ‘UTF-8’... [0s/0s] OK
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13