Last updated on 2024-07-13 11:49:21 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 10.88 | 2781.46 | 2792.34 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 7.44 | 1879.60 | 1887.04 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 1653.50 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 2987.22 | ERROR | |||
| r-devel-windows-x86_64 | 1.1.0 | 10.00 | 1024.00 | 1034.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | 8.03 | 2643.69 | 2651.72 | OK | |
| r-release-linux-x86_64 | 1.1.0 | 5.55 | 2641.92 | 2647.47 | OK | |
| r-release-macos-arm64 | 1.1.0 | 402.00 | OK | |||
| r-release-macos-x86_64 | 1.1.0 | 807.00 | OK | |||
| r-release-windows-x86_64 | 1.1.0 | 10.00 | 1034.00 | 1044.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.0 | 511.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 932.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 11.00 | 1468.00 | 1479.00 | OK |
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘cohort-intersect.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PatientProfiles.Rcheck/vign_test/PatientProfiles/vignettes/cohort-intersect_files/figure-html/unnamed-chunk-5-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16730 bytes
Input file size = 16832 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14956
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14956
Output IDAT size = 14956 bytes (1774 bytes decrease)
Output file size = 15034 bytes (1798 bytes = 10.68% decrease)
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- finished re-building ‘cohort-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘concept-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 161-195 [unnamed-chunk-11] (concept-intersect.Rmd)
Error: processing vignette 'concept-intersect.Rmd' failed with diagnostics:
ℹ In argument: `acetaminophen_minf_to_inf`
Caused by error:
! Object `acetaminophen_minf_to_inf` not found.
--- failed re-building ‘concept-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘demographics.rmd’ using rmarkdown
--- finished re-building ‘demographics.rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘summarise.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘summarise.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘table-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘table-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following file failed:
‘concept-intersect.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘cohort-intersect.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/PatientProfiles.Rcheck/vign_test/PatientProfiles/vignettes/cohort-intersect_files/figure-html/unnamed-chunk-5-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16730 bytes
Input file size = 16832 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14956
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14956
Output IDAT size = 14956 bytes (1774 bytes decrease)
Output file size = 15034 bytes (1798 bytes = 10.68% decrease)
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- finished re-building ‘cohort-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘concept-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 161-195 [unnamed-chunk-11] (concept-intersect.Rmd)
Error: processing vignette 'concept-intersect.Rmd' failed with diagnostics:
ℹ In argument: `acetaminophen_minf_to_inf`
Caused by error:
! Object `acetaminophen_minf_to_inf` not found.
--- failed re-building ‘concept-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘demographics.rmd’ using rmarkdown
--- finished re-building ‘demographics.rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘summarise.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘summarise.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘table-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘table-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following file failed:
‘concept-intersect.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘cohort-intersect.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/PatientProfiles.Rcheck/vign_test/PatientProfiles/vignettes/cohort-intersect_files/figure-html/unnamed-chunk-5-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16730 bytes
Input file size = 16832 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14956
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14956
Output IDAT size = 14956 bytes (1774 bytes decrease)
Output file size = 15034 bytes (1798 bytes = 10.68% decrease)
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- finished re-building ‘cohort-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘concept-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 161-195 [unnamed-chunk-11] (concept-intersect.Rmd)
Error: processing vignette 'concept-intersect.Rmd' failed with diagnostics:
ℹ In argument: `acetaminophen_minf_to_inf`
Caused by error:
! Object `acetaminophen_minf_to_inf` not found.
--- failed re-building ‘concept-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘demographics.rmd’ using rmarkdown
--- finished re-building ‘demographics.rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘summarise.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘summarise.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘table-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘table-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following file failed:
‘concept-intersect.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc