| Type: | Package |
| Title: | Data for (Legacy) Package 'Qindex' |
| Version: | 0.1.4 |
| Date: | 2026-08-25 |
| Description: | Example data in <doi:10.1186/s12859-023-05408-8> and <doi:10.1016/j.labinv.2023.100158>. |
| LazyData: | true |
| LazyDataCompression: | xz |
| Encoding: | UTF-8 |
| License: | GPL-2 |
| Depends: | R (≥ 4.6) |
| Language: | en-US |
| Config/roxygen2/version: | 8.1.0 |
| NeedsCompilation: | no |
| Packaged: | 2026-08-26 02:26:04 UTC; tingtingzhan |
| Author: | Tingting Zhan [cre, aut],
Misung Yi  [dtc],
Inna Chervoneva
[dtc] |
| Maintainer: | Tingting Zhan <tingtingzhan@gmail.com> |
| Repository: | CRAN |
| Date/Publication: | 2026-08-26 02:50:02 UTC |
Qindex.data: Data for (Legacy) Package 'Qindex'
Description
Example data in doi:10.1186/s12859-023-05408-8 and doi:10.1016/j.labinv.2023.100158.
Author(s)
Maintainer: Tingting Zhan tingtingzhan@gmail.com
Authors:
Tingting Zhan tingtingzhan@gmail.com
Other contributors:
Misung Yi misung.yi@dankook.ac.kr (ORCID) [data contributor]
Inna Chervoneva Inna.Chervoneva@jefferson.edu (ORCID) [data contributor]
Ki67 Data
Description
Ki67 cell data containing 622 patients.
Usage
Ki67
Format
- PATIENT_ID
factor, unique patient identifier
- tissueID
factor, TMA core identifier
- RECURRENCE
integer, recurrence indicator, 1 = Recurred, 0 = not Recurred
- RECFREESURV_MO
integer, recurrence-free survival time in months
- Marker
double, cell signal intensity of the protein immunofloerscence signal
- inner_x
integer,
x-coordinate in the cell centroid in the TMA core- inner_y
integer,
y-coordinate in the cell centroid in the TMA core- AGE_AT_DX
integer, age at diagnosis
- Tstage
integer, tumor stage
- NodeSt
integer, node stage, -1 = unknown, 0 = Node Negative, 1 = Node Positive
- HRpos
integer, indicator of hormone positive status (ER+ or PR+), 1 = positive, 0 = negative
- HistologicalGrade
integer, histology grade
- Her2_path_qIF
integer, Her2 status, 1 = positive, 0 = negative
- RACE
character, race, White, Black, Asian, Native Hawaiian or Other Pacific Islander, American Indian or Alaska Native, Unknown
- RadjCHEMO
integer, adjuvant chemo treatment, 0 = unknown, 1 = done, 2 = NOT done
- RadjRAD
integer, adjuvant radiation treatment, 0 = unknown, 1 = done, 2 = NOT done
- HORM_4cat
integer, hormone treatment, 0 = unknown, 1 = not indicated, 2 = done, 3 = recommended, but not done
- MSI
double, mean signal intensity (mean over all cells in the TMA core)