Codelist diagnostics

Introduction

In this example we’re going to summarise the characteristics of individuals with an ankle sprain, ankle fracture, forearm fracture, a hip fracture and different measurements using the Eunomia synthetic data.

We’ll begin by creating our study cohorts.

library(CDMConnector)
library(CohortConstructor)
library(CodelistGenerator)
library(PhenotypeR)
library(MeasurementDiagnostics)
library(dplyr)
library(ggplot2)

con <- DBI::dbConnect(duckdb::duckdb(), 
                      CDMConnector::eunomiaDir("synpuf-1k", "5.3"))
cdm <- CDMConnector::cdmFromCon(con = con, 
                                cdmName = "Eunomia Synpuf",
                                cdmSchema   = "main",
                                writeSchema = "main", 
                                achillesSchema = "main")

cdm$injuries <- conceptCohort(cdm = cdm,
  conceptSet = list(
    "ankle_sprain" = 81151,
    "ankle_fracture" = 4059173,
    "forearm_fracture" = 4278672,
    "hip_fracture" = 4230399,
    "measurements_cohort" = c(40660437L, 2617206L, 4034850L,  2617239L, 4098179L)
  ),
  name = "injuries")
cdm$injuries |> 
  glimpse()
#> Rows: ??
#> Columns: 4
#> Database: DuckDB 1.4.4-dev120 [root@Darwin 25.2.0:R 4.5.2//private/var/folders/sw/rd8zn92n2nz45cfcc5dcs_080000gr/T/Rtmp7s0aWR/file15a1b3fd90586.duckdb]
#> $ cohort_definition_id <int> 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5…
#> $ subject_id           <int> 672, 175, 505, 258, 777, 483, 27, 554, 947, 284, …
#> $ cohort_start_date    <date> 2009-07-03, 2009-04-03, 2009-11-18, 2008-12-18, …
#> $ cohort_end_date      <date> 2009-07-03, 2009-04-03, 2009-11-18, 2008-12-18, …

Summarising code use

To get a good understanding of the codes we’ve used to define our cohorts we can use the codelistDiagnostics() function.

code_diag <- codelistDiagnostics(cdm$injuries)

Codelist diagnostics builds on CodelistGenerator and MeasurementDiagnostics R packages to perform the following analyses:

The output of a function is a summarised result table.

Add codelist attribute

Some cohorts that may be created manually may not have the codelists recorded in the cohort_codelist attribute. The package has a utility function to record a codelist in a cohort_table object:

cohortCodelist(cdm$injuries, cohortId = 1)
#> 
#> - ankle_fracture (1 codes)
cdm$injuries <- cdm$injuries |>
  addCodelistAttribute(codelist = list(new_codelist = c(1L, 2L)), cohortName = "ankle_fracture")
cohortCodelist(cdm$injuries, cohortId = 1)
#> 
#> - new_codelist (2 codes)

Visualise the results

We will now use different functions to visualise the results generated by CohortDiagnostics. Notice that these functions are from CodelistGenerator and MeasurementDiagnostics R packages packages.

Achilles code use

tableAchillesCodeUse(code_diag)
Database name
Eunomia Synpuf
Codelist name Domain ID Standard concept name Standard concept ID Vocabulary ID Source concept name Source concept ID Source concept value
Estimate name
Record count Person count
ankle_sprain condition Sprain of ankle 81151 SNOMED Other sprains and strains of ankle 44829371 84509 31 27
Sprain of ankle, unspecified site 44820150 84500 31 27
measurements_cohort measurement Prostate cancer screening; prostate specific antigen test (psa) 2617206 HCPCS Prostate cancer screening; prostate specific antigen test (psa) 2617206 overall 146 124
Screening cytopathology, cervical or vaginal (any reporting system), collected in preservative fluid, automated thin layer preparation, with screening by automated system and manual rescreening under physician supervision 2617239 HCPCS Screening cytopathology, cervical or vaginal (any reporting system), collected in preservative fluid, automated thin layer preparation, with screening by automated system and manual rescreening under physician supervision 2617239 overall 52 47
Laboratory test 4034850 SNOMED Laboratory examination 44836706 overall 101 95
Other laboratory examination 44835528 overall 101 95
Pre-procedural laboratory examination 44827407 overall 101 95
Laboratory examination ordered as part of a routine general medical examination 44823881 overall 101 95
Laboratory examination, unspecified 44835527 overall 101 95
Drug screen, qualitative; multiple drug classes by high complexity test method (e.g., immunoassay, enzyme assay), per patient encounter 40660437 HCPCS Drug screen, qualitative; multiple drug classes by high complexity test method (e.g., immunoassay, enzyme assay), per patient encounter 40660437 overall 45 26
Immunology laboratory test 4098179 SNOMED Antibody response examination 44830850 overall 20 20
Other and unspecified nonspecific immunological findings 44830461 overall 20 20

Orphan code use

tableOrphanCodes(code_diag)
Database name
Eunomia Synpuf
Codelist name Domain ID Standard concept name Standard concept ID Vocabulary ID Source concept name Source concept ID Source concept value Relationship
Estimate name
Record count Person count
ankle_fracture condition Open fracture of medial malleolus 432749 SNOMED Fracture of medial malleolus, open 44835160 8241 Descendant 3 3
Open fracture of lateral malleolus 437998 SNOMED Fracture of lateral malleolus, open 44823518 8243 Descendant 3 3
Closed bimalleolar fracture 438879 SNOMED Bimalleolar fracture, closed 44823519 8244 Descendant 9 7
Closed fracture of medial malleolus 439162 SNOMED Fracture of medial malleolus, closed 44833988 8240 Descendant 4 3
Open bimalleolar fracture 441154 SNOMED Bimalleolar fracture, open 44827037 8245 Descendant 1 1
Closed trimalleolar fracture 441155 SNOMED Trimalleolar fracture, closed 44833989 8246 Descendant 5 4
Closed fracture of lateral malleolus 441428 SNOMED Fracture of lateral malleolus, closed 44831664 8242 Descendant 21 12
Closed fracture of talus 74777 SNOMED Closed fracture of astragalus 44833991 82521 Descendant 2 2
Closed fracture of ankle 75095 SNOMED Unspecified fracture of ankle, closed 44825882 8248 Descendant, Is a 19 16
Open fracture of talus 77131 SNOMED Open fracture of astragalus 44825885 82531 Descendant 2 2
Open fracture of ankle 78888 SNOMED Unspecified fracture of ankle, open 44833990 8249 Descendant, Is a 5 4
ankle_sprain condition Sprain of distal tibiofibular ligament 73889 SNOMED Sprain of tibiofibular (ligament), distal of ankle 44827053 84503 Descendant, Is a, Subsumes 4 4
Sprain of calcaneofibular ligament 75667 SNOMED Sprain of calcaneofibular (ligament) of ankle 44828237 84502 Descendant 1 1
Sprain of deltoid ligament of ankle 77707 SNOMED Sprain of deltoid (ligament), ankle 44837509 84501 Descendant, Is a, Subsumes 4 4
forearm_fracture condition Closed fracture of shaft of bone of forearm 4101989 SNOMED Closed fracture of shaft of radius or ulna, unspecified 44824680 81320 Descendant 1 1
Open fracture of shaft of bone of forearm 4195752 SNOMED Open fracture of shaft of radius or ulna, unspecified 44827030 81330 Descendant 2 2
Open fracture of neck of radius 432744 SNOMED Open fracture of neck of radius 44836343 81316 Descendant 1 1
Open fracture of lower end of radius AND ulna 432747 SNOMED Open fracture of lower end of radius with ulna 44832765 81354 Descendant 1 1
Open fracture of proximal end of ulna 433047 SNOMED Other and unspecified open fractures of proximal end of ulna (alone) 44824679 81314 Descendant 2 2
Open fracture of shaft of ulna 433333 SNOMED Open fracture of shaft of ulna (alone) 44837492 81332 Descendant 1 1
Open Colles' fracture 434767 SNOMED Open Colles' fracture 44837493 81351 Descendant 2 2
Open fracture of upper end of forearm 434771 SNOMED Open fracture of upper end of forearm, unspecified 44833976 81310 Descendant 1 1
Closed fracture of distal end of ulna 435374 SNOMED Closed fracture of distal end of ulna (alone) 44829345 81343 Descendant 4 3
Closed fracture of radius AND ulna 435380 SNOMED Closed fracture of shaft of radius with ulna 44828215 81323 Descendant 6 6
Closed fracture of unspecified part of radius with ulna 44832766 81383 Descendant 6 6
Closed Colles' fracture 435950 SNOMED Closed Colles' fracture 44824682 81341 Descendant 20 13
Closed fracture of proximal end of ulna 436251 SNOMED Other and unspecified closed fractures of proximal end of ulna (alone) 44821290 81304 Descendant 1 1
Closed fracture of ulna 436541 SNOMED Closed fracture of unspecified part of ulna (alone) 44837494 81382 Descendant 1 1
Closed fracture of shaft of radius 436826 SNOMED Closed fracture of shaft of radius (alone) 44831655 81321 Descendant 2 2
Closed fracture of neck of radius 436837 SNOMED Closed fracture of neck of radius 44825869 81306 Descendant 3 2
Closed fracture of distal end of radius 437116 SNOMED Other closed fractures of distal end of radius (alone) 44829344 81342 Descendant 48 33
Open fracture of lower end of forearm 437122 SNOMED Open fracture of lower end of forearm, unspecified 44832764 81350 Descendant 1 1
Open fracture of upper end of radius AND ulna 437393 SNOMED Open fracture of radius with ulna, upper end (any part) 44822369 81318 Descendant 1 1
Closed fracture of lower end of forearm 437394 SNOMED Closed fracture of lower end of forearm, unspecified 44824681 81340 Descendant 4 3
Closed fracture of shaft of ulna 437400 SNOMED Closed fracture of shaft of ulna (alone) 44833977 81322 Descendant 1 1
Open fracture of ulna 438576 SNOMED Open fracture of unspecified part of ulna (alone) 44831658 81392 Descendant 1 1
Closed fracture of radius 439166 SNOMED Closed fracture of unspecified part of radius (alone) 44820129 81381 Descendant 11 7
Closed fracture of upper end of forearm 439940 SNOMED Closed fracture of upper end of forearm, unspecified 44824678 81300 Descendant 4 3
Pathological fracture - forearm 440511 SNOMED Pathologic fracture of distal radius and ulna 44824538 73312 Descendant, Is a 1 1
Closed fracture of lower end of radius AND ulna 440538 SNOMED Closed fracture of lower end of radius with ulna 44832763 81344 Descendant 6 5
Closed fracture of upper end of radius AND ulna 440544 SNOMED Closed fracture of radius with ulna, upper end [any part] 44825870 81308 Descendant 6 2
Open fracture of distal end of radius 440546 SNOMED Other open fractures of distal end of radius (alone) 44831657 81352 Descendant 3 3
Open fracture of forearm 440851 SNOMED Open fracture of unspecified part of forearm 44824683 81390 Descendant, Is a 1 1
Closed fracture of proximal end of radius 441973 SNOMED Other and unspecified closed fractures of proximal end of radius (alone) 44827028 81307 Descendant 3 3
Closed fracture of forearm 441974 SNOMED Closed fracture of unspecified part of forearm 44833978 81380 Descendant, Is a 1 1
Fracture of radius AND ulna 442598 SNOMED Torus fracture of radius and ulna 44836347 81347 Descendant 1 1
Torus fracture of radius 443428 SNOMED Torus fracture of radius (alone) 44836346 81345 Descendant 1 1
Closed fracture of olecranon process of ulna 73036 SNOMED Closed fracture of olecranon process of ulna 44832761 81301 Descendant 7 5
Closed fracture of head of radius 73341 SNOMED Closed fracture of head of radius 44831653 81305 Descendant 6 4
Open fracture of coronoid process of ulna 74192 SNOMED Open fracture of coronoid process of ulna 44823507 81312 Descendant 1 1
Open fracture of olecranon process of ulna 74763 SNOMED Open fracture of olecranon process of ulna 44832762 81311 Descendant 4 4
Closed Monteggia's fracture 79165 SNOMED Closed Monteggia's fracture 44831652 81303 Descendant 1 1
Closed fracture of coronoid process of ulna 79172 SNOMED Closed fracture of coronoid process of ulna 44835149 81302 Descendant 2 2
Open Monteggia's fracture 81148 SNOMED Open Monteggia's fracture 44831654 81313 Descendant 1 1
hip_fracture condition Closed intertrochanteric fracture 136834 SNOMED Closed fracture of intertrochanteric section of neck of femur 44823516 82021 Descendant, Is a 56 38
Closed fracture of trochanteric section of neck of femur 44820133 82020 Descendant, Is a 56 38
Closed fracture proximal femur, subtrochanteric 4009610 SNOMED Closed fracture of subtrochanteric section of neck of femur 44824689 82022 Descendant, Is a 12 9
Closed fracture of neck of femur 434500 SNOMED Closed fracture of unspecified part of neck of femur 44825877 8208 Descendant, Is a 144 77
Closed fracture of base of neck of femur 435956 SNOMED Closed fracture of base of neck of femur 44836352 82003 Descendant 15 10
Closed fracture of midcervical section of femur 436247 SNOMED Closed fracture of midcervical section of neck of femur 44827033 82002 Descendant 16 14
Closed fracture of intracapsular section of femur 437703 SNOMED Closed fracture of intracapsular section of neck of femur, unspecified 44832772 82000 Descendant 8 7
Closed transcervical fracture of femur 440556 SNOMED Other closed transcervical fracture of neck of femur 44829353 82009 Descendant 20 17
Closed fracture of acetabulum 81696 SNOMED Closed fracture of acetabulum 44837487 8080 Descendant, Is a 10 6
measurements_cohort procedure Antibody screen, RBC, each serum technique 2212937 CPT4 Antibody screen, RBC, each serum technique 2212937 overall Descendant 55 53
Antibody identification, RBC antibodies, each panel for each serum technique 2212939 CPT4 Antibody identification, RBC antibodies, each panel for each serum technique 2212939 overall Descendant 1 1
Pathology consultation during surgery; cytologic examination (eg, touch prep, squash prep), initial site 2213298 CPT4 Pathology consultation during surgery; cytologic examination (eg, touch prep, squash prep), initial site 2213298 overall Descendant 3 3
measurement Screening cytopathology, cervical or vaginal (any reporting system), collected in preservative fluid, automated thin layer preparation, requiring interpretation by physician 2617226 HCPCS Screening cytopathology, cervical or vaginal (any reporting system), collected in preservative fluid, automated thin layer preparation, requiring interpretation by physician 2617226 overall Descendant 1 1
Screening cytopathology smears, cervical or vaginal, performed by automated system with manual rescreening 2617241 HCPCS Screening cytopathology smears, cervical or vaginal, performed by automated system with manual rescreening 2617241 overall Descendant 1 1
Wet mounts, including preparations of vaginal, cervical or skin specimens 2720582 HCPCS Wet mounts, including preparations of vaginal, cervical or skin specimens 2720582 overall Descendant 1 1
Detection of parasite 4047338 SNOMED Screening examination for other specified parasitic infections 44828606 overall Descendant 3 3
Antenatal RhD antibody screening 4060266 SNOMED Antenatal screening for isoimmunization 44831933 overall Descendant 8 8
Type 1 hypersensitivity skin test 4091110 SNOMED Diagnostic skin and sensitization tests 44823882 overall Descendant 3 3
Hematology screening test 4198132 SNOMED Screening for other disorders of blood and blood-forming organs 44830861 overall Descendant 20 20
Screening for unspecified disorder of blood and blood-forming organs 44834355 overall Descendant 20 20
Sickle cell disease screening test 4199173 SNOMED Screening for sickle-cell disease or trait 44820499 overall Descendant 9 9
Microscopic examination of cervical Papanicolaou smear 4208622 SNOMED Encounter for Papanicolaou cervical smear to confirm findings of recent normal smear following initial abnormal smear 44833154 overall Descendant 10 10
Genetic test 4237017 SNOMED Other genetic screening 44835547 overall Descendant, Is a, Subsumes 23 23
Screening for genetic disease carrier status 44834359 overall Descendant, Is a, Subsumes 23 23
Blood group typing 4258677 SNOMED Encounter for blood typing 44834343 overall Descendant 14 14
Microscopic examination of vaginal Papanicolaou smear 4258831 SNOMED Following surgery, follow-up vaginal pap smear 44821597 overall Descendant 22 22

Cohort code use

tableCohortCodeUse(code_diag)
Database name
Eunomia Synpuf
Cohort name Codelist name Standard concept name Standard concept ID Source concept name Source concept ID Source concept value Type concept id Type concept name Domain ID Table Diagnostic Phenotyper version
Estimate name
Person count Record count
ankle_sprain ankle_sprain Sprain of ankle 81151 Other sprains and strains of ankle 44829371 84509 38000230 Outpatient header - 1st position condition condition_occurrence codelistDiagnostics 0.3.0 1 1
45756835 Carrier claim header - 1st position condition condition_occurrence codelistDiagnostics 0.3.0 5 5
Sprain of ankle, unspecified site 44820150 84500 38000232 Outpatient header - 3rd position condition condition_occurrence codelistDiagnostics 0.3.0 1 1
38000235 Outpatient header - 6th position condition condition_occurrence codelistDiagnostics 0.3.0 1 1
45756835 Carrier claim header - 1st position condition condition_occurrence codelistDiagnostics 0.3.0 2 2
45756836 Carrier claim header - 2nd position condition condition_occurrence codelistDiagnostics 0.3.0 4 4
45756837 Carrier claim header - 3rd position condition condition_occurrence codelistDiagnostics 0.3.0 4 4
45756838 Carrier claim header - 4th position condition condition_occurrence codelistDiagnostics 0.3.0 1 1
45756843 Carrier claim detail - 1st position condition condition_occurrence codelistDiagnostics 0.3.0 10 10
45756844 Carrier claim detail - 2nd position condition condition_occurrence codelistDiagnostics 0.3.0 2 2
overall – NA NA NA NA NA NA NA codelistDiagnostics 0.3.0 27 31
measurements_cohort measurements_cohort Drug screen, qualitative; multiple drug classes by high complexity test method (e.g., immunoassay, enzyme assay), per patient encounter 40660437 Drug screen, qualitative; multiple drug classes by high complexity test method (e.g., immunoassay, enzyme assay), per patient encounter 40660437 G0431 45754907 Derived value measurement measurement codelistDiagnostics 0.3.0 26 45
Immunology laboratory test 4098179 Antibody response examination 44830850 V7261 45754907 Derived value measurement measurement codelistDiagnostics 0.3.0 11 11
Other and unspecified nonspecific immunological findings 44830461 79579 45754907 Derived value measurement measurement codelistDiagnostics 0.3.0 9 9
Laboratory test 4034850 Laboratory examination 44836706 V726 45754907 Derived value measurement measurement codelistDiagnostics 0.3.0 45 48
Laboratory examination ordered as part of a routine general medical examination 44823881 V7262 45754907 Derived value measurement measurement codelistDiagnostics 0.3.0 14 14
Laboratory examination, unspecified 44835527 V7260 45754907 Derived value measurement measurement codelistDiagnostics 0.3.0 16 16
Other laboratory examination 44835528 V7269 45754907 Derived value measurement measurement codelistDiagnostics 0.3.0 13 13
Pre-procedural laboratory examination 44827407 V7263 45754907 Derived value measurement measurement codelistDiagnostics 0.3.0 10 10
Prostate cancer screening; prostate specific antigen test (psa) 2617206 Prostate cancer screening; prostate specific antigen test (psa) 2617206 G0103 45754907 Derived value measurement measurement codelistDiagnostics 0.3.0 124 146
Screening cytopathology, cervical or vaginal (any reporting system), collected in preservative fluid, automated thin layer preparation, with screening by automated system and manual rescreening under physician supervision 2617239 Screening cytopathology, cervical or vaginal (any reporting system), collected in preservative fluid, automated thin layer preparation, with screening by automated system and manual rescreening under physician supervision 2617239 G0145 45754907 Derived value measurement measurement codelistDiagnostics 0.3.0 47 52
overall – NA NA NA NA NA NA NA codelistDiagnostics 0.3.0 255 364

Measurement timings

tableMeasurementSummary(code_diag)
CDM name Cohort name Variable name Estimate name Estimate value
measurements_cohort
Eunomia Synpuf measurements_cohort Number records N 1,820
Number subjects N 255
Time (days) Median [Q25 - Q75] 150 [19 - 356]
Range 0 to 930
Measurements per subject Median [Q25 - Q75] 1.00 [1.00 - 2.00]
Range 1.00 to 10.00
 
plotMeasurementSummary(code_diag)

Measurement value as concept

tableMeasurementValueAsConcept(code_diag)
CDM name Cohort name Concept name Concept ID Source concept name Source concept ID Domain ID Value as concept name Value as concept ID Estimate name Estimate value
measurements_cohort
Eunomia Synpuf measurements_cohort overall overall overall overall overall No matching concept 0 N (%) 1,820 (100.00%)
Screening cytopathology, cervical or vaginal (any reporting system), collected in preservative fluid, automated thin layer preparation, with screening by automated system and manual rescreening under physician supervision 2617239 Screening cytopathology, cervical or vaginal (any reporting system), collected in preservative fluid, automated thin layer preparation, with screening by automated system and manual rescreening under physician supervision 2617239 Measurement No matching concept 0 N (%) 260 (100.00%)
Laboratory test 4034850 Pre-procedural laboratory examination 44827407 Measurement No matching concept 0 N (%) 50 (100.00%)
Laboratory examination, unspecified 44835527 Measurement No matching concept 0 N (%) 80 (100.00%)
Immunology laboratory test 4098179 Antibody response examination 44830850 Measurement No matching concept 0 N (%) 55 (100.00%)
Laboratory test 4034850 Laboratory examination 44836706 Measurement No matching concept 0 N (%) 240 (100.00%)
Laboratory examination ordered as part of a routine general medical examination 44823881 Measurement No matching concept 0 N (%) 70 (100.00%)
Prostate cancer screening; prostate specific antigen test (psa) 2617206 Prostate cancer screening; prostate specific antigen test (psa) 2617206 Measurement No matching concept 0 N (%) 730 (100.00%)
Drug screen, qualitative; multiple drug classes by high complexity test method (e.g., immunoassay, enzyme assay), per patient encounter 40660437 Drug screen, qualitative; multiple drug classes by high complexity test method (e.g., immunoassay, enzyme assay), per patient encounter 40660437 Measurement No matching concept 0 N (%) 225 (100.00%)
Laboratory test 4034850 Other laboratory examination 44835528 Measurement No matching concept 0 N (%) 65 (100.00%)
Immunology laboratory test 4098179 Other and unspecified nonspecific immunological findings 44830461 Measurement No matching concept 0 N (%) 45 (100.00%)
 
plotMeasurementValueAsConcept(code_diag)

Measurement value as numeric

tableMeasurementValueAsNumber(code_diag)
CDM name Cohort name Concept name Concept ID Source concept name Source concept ID Domain ID Unit concept name Unit concept ID Estimate name Estimate value
measurements_cohort
Eunomia Synpuf measurements_cohort overall overall overall overall overall No matching concept 0 N 1,820
Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 1,820 (100.00%)
Prostate cancer screening; prostate specific antigen test (psa) 2617206 Prostate cancer screening; prostate specific antigen test (psa) 2617206 Measurement No matching concept 0 N 730
Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 730 (100.00%)
Screening cytopathology, cervical or vaginal (any reporting system), collected in preservative fluid, automated thin layer preparation, with screening by automated system and manual rescreening under physician supervision 2617239 Screening cytopathology, cervical or vaginal (any reporting system), collected in preservative fluid, automated thin layer preparation, with screening by automated system and manual rescreening under physician supervision 2617239 Measurement No matching concept 0 N 260
Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 260 (100.00%)
Laboratory test 4034850 Laboratory examination ordered as part of a routine general medical examination 44823881 Measurement No matching concept 0 N 70
Pre-procedural laboratory examination 44827407 Measurement No matching concept 0 N 50
Laboratory examination, unspecified 44835527 Measurement No matching concept 0 N 80
Other laboratory examination 44835528 Measurement No matching concept 0 N 65
Laboratory examination 44836706 Measurement No matching concept 0 N 240
Laboratory examination ordered as part of a routine general medical examination 44823881 Measurement No matching concept 0 Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 70 (100.00%)
Pre-procedural laboratory examination 44827407 Measurement No matching concept 0 Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 50 (100.00%)
Laboratory examination, unspecified 44835527 Measurement No matching concept 0 Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 80 (100.00%)
Other laboratory examination 44835528 Measurement No matching concept 0 Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 65 (100.00%)
Laboratory examination 44836706 Measurement No matching concept 0 Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 240 (100.00%)
Drug screen, qualitative; multiple drug classes by high complexity test method (e.g., immunoassay, enzyme assay), per patient encounter 40660437 Drug screen, qualitative; multiple drug classes by high complexity test method (e.g., immunoassay, enzyme assay), per patient encounter 40660437 Measurement No matching concept 0 N 225
Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 225 (100.00%)
Immunology laboratory test 4098179 Other and unspecified nonspecific immunological findings 44830461 Measurement No matching concept 0 N 45
Antibody response examination 44830850 Measurement No matching concept 0 N 55
Other and unspecified nonspecific immunological findings 44830461 Measurement No matching concept 0 Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 45 (100.00%)
Antibody response examination 44830850 Measurement No matching concept 0 Median [Q25 - Q75] –
Q05 - Q95 –
Q01 - Q99 –
Range –
Missing value, N (%) 55 (100.00%)
 
plotMeasurementValueAsNumber(code_diag)