Last updated on 2026-10-24 09:51:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.0 | 13.33 | 250.51 | 263.84 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.4.0 | 8.63 | 151.37 | 160.00 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.4.0 | 10.00 | 182.22 | 192.22 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.4.0 | 177.36 | OK | |||
| r-devel-windows-x86_64 | 1.4.0 | 20.00 | 332.00 | 352.00 | OK | |
| r-patched-linux-x86_64 | 1.4.0 | 17.80 | 232.40 | 250.20 | OK | |
| r-release-linux-x86_64 | 1.4.0 | 12.41 | 234.28 | 246.69 | OK | |
| r-release-macos-arm64 | 1.4.0 | 3.00 | 56.00 | 59.00 | OK | |
| r-release-macos-x86_64 | 1.4.0 | 10.00 | 273.00 | 283.00 | OK | |
| r-release-windows-x86_64 | 1.4.0 | 20.00 | 282.00 | 302.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.0 | 3.00 | 58.00 | 61.00 | OK | |
| r-oldrel-macos-x86_64 | 1.4.0 | 11.00 | 240.00 | 251.00 | OK | |
| r-oldrel-windows-x86_64 | 1.4.0 | 23.00 | 358.00 | 381.00 | OK |
Version: 1.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [46s/46s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(yardstick)
>
> test_check("yardstick")
Saving _problems/test-surv-royston-8.R
[ FAIL 1 | WARN 2 | SKIP 264 | PASS 1435 ]
══ Skipped tests (264) ═════════════════════════════════════════════════════════
• On CRAN (262): 'test-aaa-get_metrics.R:1:1', 'test-aaa-get_metrics.R:28:1',
'test-aaa-get_metrics.R:32:1', 'test-aaa-get_metrics.R:36:1',
'test-aaa-metric_set.R:395:1', 'test-aaa-metric_set.R:638:1',
'test-aaa-metric_set.R:649:1', 'test-aaa-metric_set.R:656:1',
'test-aaa-metric_set.R:699:1', 'test-aaa-metric_set.R:718:1',
'test-aaa-metric_set.R:732:1', 'test-aaa-metric_set.R:756:1',
'test-aaa-metric_set.R:771:1', 'test-aaa-metric_set.R:779:1',
'test-aaa-metrics.R:24:1', 'test-aaa-metrics.R:68:1', 'test-aaa-new.R:86:1',
'test-aaa-new.R:93:1', 'test-aaa-new.R:100:1', 'test-aaa-new.R:125:1',
'test-autoplot.R:328:1', 'test-check_metric.R:1:1',
'test-check_metric.R:8:1', 'test-check_metric.R:15:1',
'test-check_metric.R:22:1', 'test-check_metric.R:29:1',
'test-check_metric.R:41:1', 'test-check_metric.R:53:1',
'test-check_metric.R:65:1', 'test-check_metric.R:77:1',
'test-check_metric.R:89:1', 'test-check_metric.R:102:1',
'test-check_metric.R:115:1', 'test-class-accuracy.R:68:1',
'test-class-accuracy.R:111:1', 'test-class-bal_accuracy.R:94:1',
'test-class-bal_accuracy.R:137:1', 'test-class-detection_prevalence.R:86:1',
'test-class-detection_prevalence.R:129:1', 'test-class-f_meas.R:161:1',
'test-class-f_meas.R:204:1', 'test-class-f_meas.R:270:1',
'test-class-f_meas.R:282:1', 'test-class-f_meas.R:294:1',
'test-class-f_meas.R:316:1', 'test-class-f_meas.R:338:1',
'test-class-fall_out.R:83:1', 'test-class-fall_out.R:126:1',
'test-class-fall_out.R:147:1', 'test-class-fall_out.R:158:1',
'test-class-j_index.R:74:1', 'test-class-j_index.R:117:1',
'test-class-j_index.R:138:1', 'test-class-j_index.R:160:1',
'test-class-kap.R:156:1', 'test-class-kap.R:199:1', 'test-class-kap.R:266:1',
'test-class-markedness.R:101:1', 'test-class-markedness.R:144:1',
'test-class-markedness.R:165:1', 'test-class-markedness.R:177:1',
'test-class-markedness.R:189:1', 'test-class-mcc.R:90:1',
'test-class-mcc.R:133:1', 'test-class-miss_rate.R:83:1',
'test-class-miss_rate.R:126:1', 'test-class-miss_rate.R:147:1',
'test-class-miss_rate.R:158:1', 'test-class-npv.R:97:1',
'test-class-npv.R:140:1', 'test-class-npv.R:217:1', 'test-class-ppv.R:125:1',
'test-class-ppv.R:168:1', 'test-class-ppv.R:204:1', 'test-class-ppv.R:216:1',
'test-class-precision.R:95:1', 'test-class-precision.R:138:1',
'test-class-precision.R:185:1', 'test-class-precision.R:196:1',
'test-class-recall.R:95:1', 'test-class-recall.R:138:1',
'test-class-recall.R:185:1', 'test-class-recall.R:197:1',
'test-class-roc_dist.R:92:1', 'test-class-roc_dist.R:135:1',
'test-class-roc_dist.R:156:1', 'test-class-sedi.R:162:1',
'test-class-sedi.R:205:1', 'test-class-sens.R:117:1',
'test-class-sens.R:160:1', 'test-class-sens.R:209:1',
'test-class-sens.R:221:1', 'test-class-spec.R:94:1',
'test-class-spec.R:137:1', 'test-class-spec.R:158:1',
'test-class-spec.R:170:1', 'test-conf_mat.R:258:1', 'test-conf_mat.R:268:1',
'test-conf_mat.R:296:1', 'test-conf_mat.R:325:1', 'test-conf_mat.R:355:1',
'test-deprecated-template.R:1:1', 'test-deprecated-template.R:103:1',
'test-error-handling.R:3:1', 'test-error-handling.R:10:1',
'test-error-handling.R:19:1', 'test-error-handling.R:28:1',
'test-error-handling.R:35:1', 'test-error-handling.R:46:1',
'test-error-handling.R:53:1', 'test-error-handling.R:60:1',
'test-error-handling.R:72:1', 'test-error-handling.R:86:1',
'test-error-handling.R:98:1', 'test-error-handling.R:105:1',
'test-error-handling.R:112:1', 'test-error-handling.R:119:1',
'test-error-handling.R:130:1', 'test-estimator-helpers.R:1:1',
'test-event-level.R:5:1', 'test-event-level.R:10:1',
'test-event-level.R:15:1', 'test-fair-aaa.R:80:1', 'test-fair-aaa.R:171:1',
'test-fair-aaa.R:197:1', 'test-fair-aaa.R:234:1', 'test-fair-aaa.R:268:1',
'test-flatten.R:1:1', 'test-metric-tweak.R:128:1',
'test-metric-tweak.R:143:1', 'test-metric-tweak.R:150:1',
'test-metric-tweak.R:161:1', 'test-misc.R:58:1', 'test-misc.R:65:1',
'test-misc.R:74:1', 'test-misc.R:241:1', 'test-misc.R:259:1',
'test-misc.R:269:1', 'test-misc.R:335:1', 'test-misc.R:339:1',
'test-misc.R:343:1', 'test-misc.R:347:1', 'test-misc.R:351:1',
'test-misc.R:356:1', 'test-num-ccc.R:113:1', 'test-num-ccc.R:120:1',
'test-num-gini_coef.R:110:1', 'test-num-gini_coef.R:153:1',
'test-num-gini_coef.R:170:1', 'test-num-huber_loss.R:74:1',
'test-num-huber_loss.R:81:1', 'test-num-huber_loss_pseudo.R:77:1',
'test-num-huber_loss_pseudo.R:84:1', 'test-num-iic.R:67:1',
'test-num-mae.R:64:1', 'test-num-mape.R:66:1', 'test-num-mase.R:80:1',
'test-num-mase.R:87:1', 'test-num-mase.R:94:1', 'test-num-mpe.R:62:1',
'test-num-msd.R:62:1', 'test-num-mse.R:68:1',
'test-num-poisson_log_loss.R:81:1', 'test-num-rmse.R:64:1',
'test-num-rmse_relative.R:78:1', 'test-num-rpd.R:76:1',
'test-num-rpiq.R:68:1', 'test-num-rsq.R:64:1', 'test-num-rsq.R:71:1',
'test-num-rsq_trad.R:72:1', 'test-num-smape.R:69:1',
'test-orderedprob-ranked_prob_score.R:92:1',
'test-orderedprob-ranked_prob_score.R:109:1',
'test-prob-average_precision.R:87:1', 'test-prob-average_precision.R:102:1',
'test-prob-average_precision.R:143:1', 'test-prob-brier_class.R:65:1',
'test-prob-brier_class.R:80:1', 'test-prob-classification_cost.R:113:1',
'test-prob-classification_cost.R:128:1',
'test-prob-classification_cost.R:202:1',
'test-prob-classification_cost.R:298:1',
'test-prob-classification_cost.R:320:1',
'test-prob-classification_cost.R:338:1',
'test-prob-classification_cost.R:356:1',
'test-prob-classification_cost.R:393:1', 'test-prob-gain_capture.R:122:1',
'test-prob-gain_capture.R:137:1', 'test-prob-mn_log_loss.R:102:1',
'test-prob-mn_log_loss.R:117:1', 'test-prob-mn_log_loss.R:124:1',
'test-prob-pr_auc.R:67:1', 'test-prob-pr_auc.R:82:1',
'test-prob-roc_auc.R:146:1', 'test-prob-roc_auc.R:161:1',
'test-prob-roc_auc.R:180:1', 'test-prob-roc_auc.R:244:1',
'test-prob-roc_auc.R:373:1', 'test-prob-roc_auc.R:381:1',
'test-prob-roc_auc.R:389:1', 'test-prob-roc_auc.R:429:1',
'test-prob-roc_auc.R:518:1', 'test-prob-roc_aunp.R:85:1',
'test-prob-roc_aunp.R:100:1', 'test-prob-roc_aunp.R:107:1',
'test-prob-roc_aunp.R:132:1', 'test-prob-roc_aunu.R:75:1',
'test-prob-roc_aunu.R:90:1', 'test-prob-roc_aunu.R:97:1',
'test-prob-roc_aunu.R:122:1', 'test-probably.R:1:1', 'test-probably.R:29:1',
'test-probably.R:47:1', 'test-probcurve-gain_curve.R:23:1',
'test-probcurve-gain_curve.R:125:1', 'test-probcurve-gain_curve.R:140:1',
'test-probcurve-lift_curve.R:16:1', 'test-probcurve-lift_curve.R:101:1',
'test-probcurve-lift_curve.R:116:1', 'test-probcurve-pr_curve.R:32:1',
'test-probcurve-pr_curve.R:97:1', 'test-probcurve-pr_curve.R:112:1',
'test-probcurve-pr_curve.R:237:1', 'test-probcurve-roc_curve.R:34:1',
'test-probcurve-roc_curve.R:98:1', 'test-probcurve-roc_curve.R:113:1',
'test-probcurve-roc_curve.R:157:1', 'test-probcurve-roc_curve.R:166:1',
'test-probcurve-roc_curve.R:175:1', 'test-probcurve-roc_curve.R:186:1',
'test-probcurve-roc_curve.R:224:1',
'test-quant-weighted_interval_score.R:33:1',
'test-quant-weighted_interval_score.R:153:1',
'test-surv-brier_survival.R:116:1',
'test-surv-brier_survival_integrated.R:119:1',
'test-surv-brier_survival_integrated.R:126:1',
'test-surv-concordance_survival.R:132:1',
'test-surv-roc_auc_survival.R:62:1', 'test-surv-roc_curve_survival.R:223:1',
'test-surv-royston.R:117:1', 'test-template.R:17:1', 'test-template.R:141:1',
'test-template.R:409:1', 'test-template.R:691:1', 'test-template.R:928:1',
'test-template.R:1127:1', 'test-template.R:1194:1', 'test-template.R:1450:1',
'test-template.R:1700:1', 'test-template.R:1851:1', 'test-template.R:1928:1',
'test-validation.R:1:1', 'test-validation.R:44:1', 'test-validation.R:112:1',
'test-validation.R:174:1', 'test-validation.R:244:1',
'test-validation.R:306:1', 'test-validation.R:376:1',
'test-validation.R:400:1', 'test-validation.R:439:1',
'test-validation.R:571:1', 'test-validation.R:586:1'
• empty test (1): 'test-misc.R:360:1'
• tune is installed (1): 'test-template.R:2041:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-surv-royston.R:8:3'): Calculations are correct ─────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─survival::royston(reference_fit) at test-surv-royston.R:8:3
2. ├─stats::predict(fit)
3. └─survival:::predict.coxph(fit)
4. └─stats::delete.response(Terms)
5. └─stats (local) off(a$specials[[i]])
[ FAIL 1 | WARN 2 | SKIP 264 | PASS 1435 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc