Last updated on 2026-09-17 17:51:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.7 | 7.00 | 118.72 | 125.72 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.7 | 5.22 | 85.55 | 90.77 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.7 | 52.33 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.7 | 5.00 | 45.09 | 50.09 | ERROR | |
| r-devel-windows-x86_64 | 0.1.7 | 10.00 | 146.00 | 156.00 | OK | |
| r-patched-linux-x86_64 | 0.1.7 | 7.85 | 115.62 | 123.47 | OK | |
| r-release-linux-x86_64 | 0.1.7 | 6.93 | 113.44 | 120.37 | OK | |
| r-release-macos-arm64 | 0.1.7 | 2.00 | 35.00 | 37.00 | OK | |
| r-release-macos-x86_64 | 0.1.7 | 5.00 | 135.00 | 140.00 | OK | |
| r-release-windows-x86_64 | 0.1.7 | 11.00 | 140.00 | 151.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.7 | 1.00 | 67.00 | 68.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.7 | 5.00 | 144.00 | 149.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.7 | 13.00 | 181.00 | 194.00 | OK |
Version: 0.1.7
Check: examples
Result: ERROR
Running examples in ‘veesa-Ex.R’ failed
The error most likely occurred in:
> ### Name: compute_pfi
> ### Title: Compute permutation feature importance (PFI)
> ### Aliases: compute_pfi
>
> ### ** Examples
>
> # Load packages
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> library(tidyr)
> library(randomForest)
randomForest 4.7-1.2
Type rfNews() to see new features/changes/bug fixes.
Attaching package: ‘randomForest’
The following object is masked from ‘package:dplyr’:
combine
>
> # Select a subset of functions from shifted peaks data
> sub_ids <-
+ shifted_peaks$data |>
+ select(data, group, id) |>
+ distinct() |>
+ group_by(data, group) |>
+ slice(1:4) |>
+ ungroup()
>
> # Create a smaller version of shifted data
> shifted_peaks_sub <-
+ shifted_peaks$data |>
+ filter(id %in% sub_ids$id)
>
> # Extract times
> shifted_peaks_times = unique(shifted_peaks_sub$t)
>
> # Convert training data to matrix
> shifted_peaks_train_matrix <-
+ shifted_peaks_sub |>
+ filter(data == "Training") |>
+ select(-t) |>
+ mutate(index = paste0("t", index)) |>
+ pivot_wider(names_from = index, values_from = y) |>
+ select(-data, -id, -group) |>
+ as.matrix() |>
+ t()
>
> # Obtain veesa pipeline training data
> veesa_train <-
+ prep_training_data(
+ f = shifted_peaks_train_matrix,
+ time = shifted_peaks_times,
+ fpca_method = "jfpca"
+ )
Error in `fdasrvf::time_warping()`:
! `penalty_method` must be one of "roughness", "l2gam", "l2psi",
"geodesic", "none", or "norm", not "roughness".
Backtrace:
▆
1. └─veesa::prep_training_data(...)
2. └─fdasrvf::time_warping(penalty_method = penalty_method)
3. ├─fdasrvf:::penalty_alias(rlang::arg_match(penalty_method))
4. └─rlang::arg_match(penalty_method)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.7
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(veesa)
>
> test_check("veesa")
randomForest 4.7-1.2
Type rfNews() to see new features/changes/bug fixes.
Attaching package: 'dplyr'
The following object is masked from 'package:randomForest':
combine
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Saving _problems/test-prep_testing_data-10.R
Saving _problems/test-prep_training_data-11.R
Saving _problems/test-prep_training_data-20.R
Saving _problems/test-prep_training_data-33.R
Saving _problems/test-prep_training_data-49.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 16 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-prep_testing_data.R:10:1'): (code run outside of `test_that()`) ──
Error in `fdasrvf::time_warping(f = f, time = time, lambda = lambda, penalty_method = penalty_method, centroid_type = centroid_type, center_warpings = center_warpings, parallel = parallel, cores = cores, optim_method = optim_method, max_iter = max_iter)`: `penalty_method` must be one of "roughness", "l2gam", "l2psi", "geodesic", "none", or "norm", not "roughness".
Backtrace:
▆
1. └─veesa::prep_training_data(mock_f, mock_time, "jfpca") at test-prep_testing_data.R:10:1
2. └─fdasrvf::time_warping(penalty_method = penalty_method)
3. ├─fdasrvf:::penalty_alias(rlang::arg_match(penalty_method))
4. └─rlang::arg_match(penalty_method)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-prep_training_data.R:11:3'): Output structure is correct ───────
Error in `fdasrvf::time_warping(f = f, time = time, lambda = lambda, penalty_method = penalty_method, centroid_type = centroid_type, center_warpings = center_warpings, parallel = parallel, cores = cores, optim_method = optim_method, max_iter = max_iter)`: `penalty_method` must be one of "roughness", "l2gam", "l2psi", "geodesic", "none", or "norm", not "roughness".
Backtrace:
▆
1. └─veesa::prep_training_data(mock_f, mock_time, "jfpca") at test-prep_training_data.R:11:3
2. └─fdasrvf::time_warping(penalty_method = penalty_method)
3. ├─fdasrvf:::penalty_alias(rlang::arg_match(penalty_method))
4. └─rlang::arg_match(penalty_method)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-prep_training_data.R:20:3'): Function handles different fpca methods ──
Error in `fdasrvf::time_warping(f = f, time = time, lambda = lambda, penalty_method = penalty_method, centroid_type = centroid_type, center_warpings = center_warpings, parallel = parallel, cores = cores, optim_method = optim_method, max_iter = max_iter)`: `penalty_method` must be one of "roughness", "l2gam", "l2psi", "geodesic", "none", or "norm", not "roughness".
Backtrace:
▆
1. └─veesa::prep_training_data(mock_f, mock_time, fpca_method = "jfpca") at test-prep_training_data.R:20:3
2. └─fdasrvf::time_warping(penalty_method = penalty_method)
3. ├─fdasrvf:::penalty_alias(rlang::arg_match(penalty_method))
4. └─rlang::arg_match(penalty_method)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-prep_training_data.R:30:3'): Function throws error with incorrect fpca_method ──
Error in `fdasrvf::time_warping(f = f, time = time, lambda = lambda, penalty_method = penalty_method, centroid_type = centroid_type, center_warpings = center_warpings, parallel = parallel, cores = cores, optim_method = optim_method, max_iter = max_iter)`: `penalty_method` must be one of "roughness", "l2gam", "l2psi", "geodesic", "none", or "norm", not "roughness".
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-prep_training_data.R:30:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─veesa::prep_training_data(mock_f, mock_time, fpca_method = "invalid_method")
8. └─fdasrvf::time_warping(penalty_method = penalty_method)
9. ├─fdasrvf:::penalty_alias(rlang::arg_match(penalty_method))
10. └─rlang::arg_match(penalty_method)
11. └─rlang::abort(msg, call = error_call, arg = error_arg)
── Error ('test-prep_training_data.R:49:3'): Default values for optional parameters are set correctly ──
Error in `fdasrvf::time_warping(f = f, time = time, lambda = lambda, penalty_method = penalty_method, centroid_type = centroid_type, center_warpings = center_warpings, parallel = parallel, cores = cores, optim_method = optim_method, max_iter = max_iter)`: `penalty_method` must be one of "roughness", "l2gam", "l2psi", "geodesic", "none", or "norm", not "roughness".
Backtrace:
▆
1. └─veesa::prep_training_data(mock_f, mock_time, fpca_method = "jfpca") at test-prep_training_data.R:49:3
2. └─fdasrvf::time_warping(penalty_method = penalty_method)
3. ├─fdasrvf:::penalty_alias(rlang::arg_match(penalty_method))
4. └─rlang::arg_match(penalty_method)
5. └─rlang::abort(msg, call = error_call, arg = error_arg)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 16 ]
Error:
! Test failures.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc