Last updated on 2026-08-02 13:49:37 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 2.51 | 38.68 | 41.19 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 1.60 | 29.19 | 30.79 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 58.78 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 34.84 | ERROR | |||
| r-devel-windows-x86_64 | 1.1 | 3.00 | 64.00 | 67.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1 | 2.61 | 67.50 | 70.11 | OK | |
| r-release-linux-x86_64 | 1.1 | 2.23 | 68.29 | 70.52 | OK | |
| r-release-macos-arm64 | 1.1 | 1.00 | 23.00 | 24.00 | OK | |
| r-release-macos-x86_64 | 1.1 | 2.00 | 104.00 | 106.00 | OK | |
| r-release-windows-x86_64 | 1.1 | 4.00 | 100.00 | 104.00 | OK | |
| r-oldrel-macos-arm64 | 1.1 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1 | 2.00 | 92.00 | 94.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1 | 5.00 | 114.00 | 119.00 | OK |
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘resde-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sdefit
> ### Title: Fit SDE model
> ### Aliases: sdefit
>
> ### ** Examples
>
> m <- sdemodel(phi=~x^c, beta0=~b*a^c, beta1=~-b)
Model:
y = phi(x, c) = x^c
y' = phiprime(x, c) = c * x^(c - 1)
dY = (b * a^c + -b * Y) dt + sigmap * dW
Y(0) = phi(0, c)
yi = Y(ti) + sigmam * ei
Parameters:
a, b, c
> mod1 <- sdefit(m, "height", "age", data=Loblolly[Loblolly$Seed=="301",],
+ start=c(a=70, b=0.1, c=1))
Warning: Solution at boundary, it may be a local optimum. Compare logLik with mum = 0
> mod2 <- sdefit(m, "height", "age", "Seed", Loblolly, global=c(b=0.1, c=0.5),
+ local=c(a=72))
Warning in reorder(lower) :
different names for ‘start’ and ‘lower’: not reordering to match
Warning in reorder(upper) :
different names for ‘start’ and ‘upper’: not reordering to match
Error in nls(frml, data, start = start, control = control, algorithm = "port", :
Convergence failure: initial par violates constraints
Calls: sdefit -> nls
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘resde-vignette.Rnw’ using knitr
Quitting from resde-vignette.Rnw:401-406 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
missing value where TRUE/FALSE needed
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Quitting from resde-vignette.Rnw:401-406 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if (any(unlist(start) < low) || any(unlist(start) > upp)) {, iv[1L] <- 300, return(if (give.v) list(iv = iv, v = v[seq_len(18L)]) else iv), }
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'resde-vignette.Rnw' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘resde-vignette.Rnw’
SUMMARY: processing the following file failed:
‘resde-vignette.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0QQH6T’ ‘~/tmp/scratch/Rtmp0rcX0y’
‘~/tmp/scratch/Rtmp1G84e6’ ‘~/tmp/scratch/Rtmp1fQYEY’
‘~/tmp/scratch/Rtmp27cdpR’ ‘~/tmp/scratch/Rtmp2Pa0OI’
‘~/tmp/scratch/Rtmp3VZ063’ ‘~/tmp/scratch/Rtmp3lCdPs’
‘~/tmp/scratch/Rtmp44SB2t’ ‘~/tmp/scratch/Rtmp4Leuwq’
‘~/tmp/scratch/Rtmp4rU1l2’ ‘~/tmp/scratch/Rtmp5iljTx’
‘~/tmp/scratch/Rtmp66Tys2’ ‘~/tmp/scratch/Rtmp6Xifed’
‘~/tmp/scratch/Rtmp6daptM’ ‘~/tmp/scratch/Rtmp74NRo0’
‘~/tmp/scratch/Rtmp7nvMUx’ ‘~/tmp/scratch/Rtmp85lMbl’
‘~/tmp/scratch/Rtmp9Of6RP’ ‘~/tmp/scratch/RtmpAJhSHd’
‘~/tmp/scratch/RtmpAmPtKM’ ‘~/tmp/scratch/RtmpCwJ3Cg’
‘~/tmp/scratch/RtmpEDdkWv’ ‘~/tmp/scratch/RtmpEbKHlL’
‘~/tmp/scratch/RtmpF3NZiI’ ‘~/tmp/scratch/RtmpGH2THQ’
‘~/tmp/scratch/RtmpHUjGak’ ‘~/tmp/scratch/RtmpHwz9Vx’
‘~/tmp/scratch/RtmpI8UwBO’ ‘~/tmp/scratch/RtmpIHae2E’
‘~/tmp/scratch/RtmpIZJKJZ’ ‘~/tmp/scratch/RtmpIeBVYE’
‘~/tmp/scratch/RtmpJ5D3Hd’ ‘~/tmp/scratch/RtmpJifrdM’
‘~/tmp/scratch/RtmpKCJNuI’ ‘~/tmp/scratch/RtmpL6DYjT’
‘~/tmp/scratch/RtmpLKefJA’ ‘~/tmp/scratch/RtmpLrIjDX’
‘~/tmp/scratch/RtmpMJZkVq’ ‘~/tmp/scratch/RtmpNPf8iQ’
‘~/tmp/scratch/RtmpNcppTM’ ‘~/tmp/scratch/RtmpOFfrvF’
‘~/tmp/scratch/RtmpOHwKbN’ ‘~/tmp/scratch/RtmpORztB6’
‘~/tmp/scratch/RtmpP0x0sc’ ‘~/tmp/scratch/RtmpQLp0Me’
‘~/tmp/scratch/RtmpRGf4Yx’ ‘~/tmp/scratch/RtmpRemwbZ’
‘~/tmp/scratch/RtmpRsDoeO’ ‘~/tmp/scratch/RtmpSwKqjp’
‘~/tmp/scratch/RtmpTEYYjJ’ ‘~/tmp/scratch/RtmpTW8PQp’
‘~/tmp/scratch/RtmpTYUVc5’ ‘~/tmp/scratch/RtmpTpAgYG’
‘~/tmp/scratch/RtmpUN3Hjo’ ‘~/tmp/scratch/RtmpUQAref’
‘~/tmp/scratch/RtmpUVQIPh’ ‘~/tmp/scratch/RtmpV3Dgs7’
‘~/tmp/scratch/RtmpVYskrE’ ‘~/tmp/scratch/RtmpWFIPo5’
‘~/tmp/scratch/RtmpWtjKuD’ ‘~/tmp/scratch/RtmpWvDdBU’
‘~/tmp/scratch/RtmpYwnmeH’ ‘~/tmp/scratch/RtmpZyT0Bx’
‘~/tmp/scratch/RtmpaAdRmo’ ‘~/tmp/scratch/RtmpaAwu9Q’
‘~/tmp/scratch/RtmpaDVvKw’ ‘~/tmp/scratch/RtmpauxVyL’
‘~/tmp/scratch/RtmpcJvIcE’ ‘~/tmp/scratch/Rtmpd8iyPO’
‘~/tmp/scratch/Rtmpei2D99’ ‘~/tmp/scratch/Rtmpg3CXFi’
‘~/tmp/scratch/Rtmpg3rrIN’ ‘~/tmp/scratch/RtmphivGPz’
‘~/tmp/scratch/RtmphtAQ6c’ ‘~/tmp/scratch/RtmpiVJILZ’
‘~/tmp/scratch/RtmpiY4Ilo’ ‘~/tmp/scratch/RtmpjdsuCc’
‘~/tmp/scratch/RtmpjtIzsm’ ‘~/tmp/scratch/Rtmpk6TaoG’
‘~/tmp/scratch/RtmpkOItTh’ ‘~/tmp/scratch/RtmpkP5TBQ’
‘~/tmp/scratch/RtmpkggSOV’ ‘~/tmp/scratch/RtmplTyUPZ’
‘~/tmp/scratch/RtmplmJ1Ca’ ‘~/tmp/scratch/RtmpmU8bVF’
‘~/tmp/scratch/Rtmpmqz0rz’ ‘~/tmp/scratch/RtmpmzwYJF’
‘~/tmp/scratch/RtmpoJE2dl’ ‘~/tmp/scratch/RtmpoohQFQ’
‘~/tmp/scratch/RtmppP4NI8’ ‘~/tmp/scratch/RtmppSNFgG’
‘~/tmp/scratch/Rtmpq3JPkB’ ‘~/tmp/scratch/Rtmpqpid9x’
‘~/tmp/scratch/RtmptGVk91’ ‘~/tmp/scratch/RtmptPiHug’
‘~/tmp/scratch/RtmpuL4rhG’ ‘~/tmp/scratch/RtmpuLZwlQ’
‘~/tmp/scratch/RtmpuSv3eO’ ‘~/tmp/scratch/Rtmpvlec4w’
‘~/tmp/scratch/RtmpvrPoab’ ‘~/tmp/scratch/RtmpwY2dhm’
‘~/tmp/scratch/Rtmpx608pe’ ‘~/tmp/scratch/Rtmpx61Rz1’
‘~/tmp/scratch/RtmpxAutXt’ ‘~/tmp/scratch/Rtmpxwm748’
‘~/tmp/scratch/RtmpycdGMU’ ‘~/tmp/scratch/Rtmpzdpj74’
‘~/tmp/scratch/Rtmpzn7Nuk’ ‘~/tmp/scratch/RtmpzsynaH’
‘~/tmp/scratch/xvfb-run.0X2h4M’ ‘~/tmp/scratch/xvfb-run.0bj1pk’
‘~/tmp/scratch/xvfb-run.4hkA6N’ ‘~/tmp/scratch/xvfb-run.5EKCP3’
‘~/tmp/scratch/xvfb-run.6dFUcW’ ‘~/tmp/scratch/xvfb-run.88NqYR’
‘~/tmp/scratch/xvfb-run.8hpFXU’ ‘~/tmp/scratch/xvfb-run.A68Y23’
‘~/tmp/scratch/xvfb-run.FcqV5i’ ‘~/tmp/scratch/xvfb-run.JArYwN’
‘~/tmp/scratch/xvfb-run.KNIoFn’ ‘~/tmp/scratch/xvfb-run.L9VdJv’
‘~/tmp/scratch/xvfb-run.MoHViO’ ‘~/tmp/scratch/xvfb-run.QjqtMt’
‘~/tmp/scratch/xvfb-run.RSntgw’ ‘~/tmp/scratch/xvfb-run.UE5E5t’
‘~/tmp/scratch/xvfb-run.V0eIyT’ ‘~/tmp/scratch/xvfb-run.XGxiLT’
‘~/tmp/scratch/xvfb-run.XRVuGh’ ‘~/tmp/scratch/xvfb-run.aPUTOJ’
‘~/tmp/scratch/xvfb-run.cyBBgX’ ‘~/tmp/scratch/xvfb-run.dBt5Xw’
‘~/tmp/scratch/xvfb-run.fEx7K4’ ‘~/tmp/scratch/xvfb-run.gD5of6’
‘~/tmp/scratch/xvfb-run.gFDGUO’ ‘~/tmp/scratch/xvfb-run.jZQWQR’
‘~/tmp/scratch/xvfb-run.mUyolO’ ‘~/tmp/scratch/xvfb-run.mv0x6R’
‘~/tmp/scratch/xvfb-run.o2LHvk’ ‘~/tmp/scratch/xvfb-run.q6lgok’
‘~/tmp/scratch/xvfb-run.qTD56z’ ‘~/tmp/scratch/xvfb-run.r6YLet’
‘~/tmp/scratch/xvfb-run.tQ4LA8’ ‘~/tmp/scratch/xvfb-run.wAifke’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘resde-Ex.R’ failed
The error most likely occurred in:
> ### Name: sdefit
> ### Title: Fit SDE model
> ### Aliases: sdefit
>
> ### ** Examples
>
> m <- sdemodel(phi=~x^c, beta0=~b*a^c, beta1=~-b)
Model:
y = phi(x, c) = x^c
y' = phiprime(x, c) = c * x^(c - 1)
dY = (b * a^c + -b * Y) dt + sigmap * dW
Y(0) = phi(0, c)
yi = Y(ti) + sigmam * ei
Parameters:
a, b, c
> mod1 <- sdefit(m, "height", "age", data=Loblolly[Loblolly$Seed=="301",],
+ start=c(a=70, b=0.1, c=1))
Warning: Solution at boundary, it may be a local optimum. Compare logLik with mum = 0
> mod2 <- sdefit(m, "height", "age", "Seed", Loblolly, global=c(b=0.1, c=0.5),
+ local=c(a=72))
Warning in reorder(lower) :
different names for ‘start’ and ‘lower’: not reordering to match
Warning in reorder(upper) :
different names for ‘start’ and ‘upper’: not reordering to match
Error in nls(frml, data, start = start, control = control, algorithm = "port", :
Convergence failure: initial par violates constraints
Calls: sdefit -> nls
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘resde-vignette.Rnw’ using knitr
Quitting from resde-vignette.Rnw:401-406 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
missing value where TRUE/FALSE needed
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Quitting from resde-vignette.Rnw:401-406 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if (any(unlist(start) < low) || any(unlist(start) > upp)) {, iv[1L] <- 300, return(if (give.v) list(iv = iv, v = v[seq_len(18L)]) else iv), }
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'resde-vignette.Rnw' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘resde-vignette.Rnw’
SUMMARY: processing the following file failed:
‘resde-vignette.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64
Version: 1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘resde-vignette.Rnw’ using knitr
Quitting from resde-vignette.Rnw:401-406 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `if (any(unlist(start) < low) || any(unlist(start) > upp)) ...`:
! missing value where TRUE/FALSE needed
---
Backtrace:
x
1. \-resde::sdefit(...)
2. \-stats::nls(...)
3. \-stats:::nls_port_fit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'resde-vignette.Rnw' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘resde-vignette.Rnw’
SUMMARY: processing the following file failed:
‘resde-vignette.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc