Last updated on 2026-10-24 15:51:38 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.19.6 | 19.71 | 357.17 | 376.88 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.19.6 | 13.79 | 212.10 | 225.89 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.19.6 | 17.00 | 281.83 | 298.83 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.19.6 | 14.00 | 236.29 | 250.29 | OK | |
| r-devel-windows-x86_64 | 2.19.6 | 24.00 | 406.00 | 430.00 | OK | |
| r-patched-linux-x86_64 | 2.19.6 | 20.31 | 335.23 | 355.54 | OK | |
| r-release-linux-x86_64 | 2.19.6 | 19.94 | 337.58 | 357.52 | OK | |
| r-release-macos-arm64 | 2.19.6 | 5.00 | 96.00 | 101.00 | OK | |
| r-release-macos-x86_64 | 2.19.6 | 14.00 | 308.00 | 322.00 | OK | |
| r-release-windows-x86_64 | 2.19.6 | 21.00 | 369.00 | 390.00 | OK | |
| r-oldrel-macos-arm64 | 2.19.6 | 5.00 | 115.00 | 120.00 | OK | |
| r-oldrel-macos-x86_64 | 2.19.6 | 14.00 | 255.00 | 269.00 | OK | |
| r-oldrel-windows-x86_64 | 2.19.6 | 31.00 | 513.00 | 544.00 | OK |
Version: 2.19.6
Check: examples
Result: ERROR
Running examples in ‘qgcomp-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: coxmsm_fit
> ### Title: Marginal structural Cox model (MSM) fitting within quantile
> ### g-computation
> ### Aliases: coxmsm_fit
>
> ### ** Examples
>
> set.seed(50)
> dat <- data.frame(time=(tmg <- pmin(.1,rweibull(50, 10, 0.1))), d=1.0*(tmg<0.1),
+ x1=runif(50), x2=runif(50), z=runif(50))
> expnms=paste0("x", 1:2)
> qdata = quantize(dat, expnms)$data
> f = survival::Surv(time, d)~x1 + x2
> fit <- survival::coxph(f, data = qdata, y=TRUE, x=TRUE)
> r1 = qdata[1,,drop=FALSE]
> times = survival::survfit(fit, newdata=r1, se.fit=FALSE)$time
Error in a$specials[[i]] : subscript out of bounds
Calls: <Anonymous> -> survfit.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.19.6
Check: tests
Result: ERROR
Running ‘test_asis.R’ [3s/4s]
Running ‘test_basics.R’ [3s/4s]
Running ‘test_bayesqgcomp.R’ [4s/4s]
Running ‘test_boot_ints.R’ [4s/5s]
Running ‘test_bootchooser.R’ [5s/7s]
Running ‘test_ee.R’ [19s/23s]
Running ‘test_factor.R’ [3s/4s]
Running ‘test_id.R’ [3s/4s]
Running ‘test_mice.R’ [3s/4s]
Running ‘test_multinomial.R’ [0s/0s]
Running ‘test_numeric.R’ [5s/7s]
Running ‘test_poisson.R’ [3s/4s]
Running ‘test_splits.R’ [3s/4s]
Running ‘test_weights.R’ [4s/5s]
Running the tests in ‘tests/test_asis.R’ failed.
Complete output:
> cat("# asis test\n")
# asis test
> library("qgcomp")
> # does the checknames correctly intuit which are linear/non-linear models for common specifications
> set.seed(50)
> N=50
> dat <- data.frame(time=(tmg <- pmin(.1,rweibull(N, 10, 0.1))),
+ d=1.0*(tmg<0.1), x1=runif(N), x2=runif(N), z=runif(N))
> expnms=paste0("x", 1:2)
>
>
> ##### non additive
>
> f0 = survival::Surv(time, d)~ x1 + x2
> f1 = survival::Surv(time, d)~ x1*x2
> f2 = survival::Surv(time, d)~ x1 + x2 + I(x1*x2)
> f3 = survival::Surv(time, d)~x1 + x2 + x1:x2
> set.seed(12321)
> #res = try(qgcomp(f0, expnms = expnms, data = dat, B=2, MCsize=50))
> #stopifnot(class(res)=="try-error")
> res = try(obj0 <- qgcomp(f0, expnms = expnms, data = dat))
> stopifnot(inherits(res, "qgcompfit"))
> set.seed(12321)
> res = try(obj1 <- qgcomp(f1, expnms = expnms, data = dat, B=2, MCsize=50))
Error in a$specials[[i]] : subscript out of bounds
> stopifnot(inherits(res, "qgcompfit"))
Error: inherits(res, "qgcompfit") is not TRUE
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.19.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘qgcomp-advanced-vignette.Rmd’ using knitr
Quitting from qgcomp-advanced-vignette.Rmd:78-92 [tm2evnt2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─qgcomp::qgcomp.cox.boot(...)
2. └─qgcomp::coxmsm_fit(...)
3. └─base::lapply(intvals, predit)
4. └─qgcomp (local) FUN(X[[i]], ...)
5. ├─survival::survfit(fit, newdata = newdata, se.fit = FALSE)
6. └─survival:::survfit.coxph(fit, newdata = newdata, se.fit = FALSE)
7. └─survival:::model.matrix.coxph(object, data = mf)
8. └─stats::delete.response(object$terms)
9. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'qgcomp-advanced-vignette.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘qgcomp-advanced-vignette.Rmd’
--- re-building ‘qgcomp-basic-vignette.Rmd’ using knitr
--- finished re-building ‘qgcomp-basic-vignette.Rmd’
--- re-building ‘qgcomp-vignette.Rmd’ using knitr
--- finished re-building ‘qgcomp-vignette.Rmd’
SUMMARY: processing the following file failed:
‘qgcomp-advanced-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc