Last updated on 2026-08-02 19:49:40 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.13 | 6.87 | 195.23 | 202.10 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.3.13 | 5.06 | 131.72 | 136.78 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.13 | 12.00 | 296.16 | 308.16 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.13 | 122.33 | ERROR | |||
| r-devel-windows-x86_64 | 0.3.13 | 8.00 | 198.00 | 206.00 | ERROR | |
| r-patched-linux-x86_64 | 0.3.13 | 6.49 | 180.35 | 186.84 | ERROR | |
| r-release-linux-x86_64 | 0.3.13 | 5.78 | 181.69 | 187.47 | ERROR | |
| r-release-macos-arm64 | 0.3.13 | 2.00 | 55.00 | 57.00 | OK | |
| r-release-macos-x86_64 | 0.3.13 | 5.00 | 242.00 | 247.00 | OK | |
| r-release-windows-x86_64 | 0.3.13 | 8.00 | 203.00 | 211.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.3.13 | 2.00 | 55.00 | 57.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.13 | 5.00 | 190.00 | 195.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.13 | 11.00 | 274.00 | 285.00 | ERROR |
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [53s/69s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.13
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0sY47h’ ‘~/tmp/scratch/Rtmp1PptuC’
‘~/tmp/scratch/Rtmp2BqMMt’ ‘~/tmp/scratch/Rtmp2VX2l8’
‘~/tmp/scratch/Rtmp2ahI3C’ ‘~/tmp/scratch/Rtmp2bm3Qr’
‘~/tmp/scratch/Rtmp2g6Tr1’ ‘~/tmp/scratch/Rtmp4zolZz’
‘~/tmp/scratch/Rtmp52rRdM’ ‘~/tmp/scratch/Rtmp60vTeW’
‘~/tmp/scratch/Rtmp6BGOzy’ ‘~/tmp/scratch/Rtmp6Kvkyz’
‘~/tmp/scratch/Rtmp6LCZ1p’ ‘~/tmp/scratch/Rtmp6f34PS’
‘~/tmp/scratch/Rtmp6il3hV’ ‘~/tmp/scratch/Rtmp6oGr2G’
‘~/tmp/scratch/Rtmp6xHYKp’ ‘~/tmp/scratch/Rtmp7Kmvf7’
‘~/tmp/scratch/Rtmp7xneAb’ ‘~/tmp/scratch/Rtmp8CPIIw’
‘~/tmp/scratch/Rtmp8Jj4dQ’ ‘~/tmp/scratch/Rtmp8hfLG3’
‘~/tmp/scratch/Rtmp8xFERl’ ‘~/tmp/scratch/Rtmp9k4UfY’
‘~/tmp/scratch/RtmpAPpXEZ’ ‘~/tmp/scratch/RtmpAdkMcb’
‘~/tmp/scratch/RtmpB2jHGy’ ‘~/tmp/scratch/RtmpBHDr4q’
‘~/tmp/scratch/RtmpBQ4f3O’ ‘~/tmp/scratch/RtmpBb6YeE’
‘~/tmp/scratch/RtmpBdjWlx’ ‘~/tmp/scratch/RtmpBitXmH’
‘~/tmp/scratch/RtmpBqrERW’ ‘~/tmp/scratch/RtmpClG87l’
‘~/tmp/scratch/RtmpClGDuF’ ‘~/tmp/scratch/RtmpD0mq4i’
‘~/tmp/scratch/RtmpD59i6v’ ‘~/tmp/scratch/RtmpDL3T5D’
‘~/tmp/scratch/RtmpDV6mGx’ ‘~/tmp/scratch/RtmpDVohpo’
‘~/tmp/scratch/RtmpDbRQy6’ ‘~/tmp/scratch/RtmpDerRnd’
‘~/tmp/scratch/RtmpDsheP6’ ‘~/tmp/scratch/RtmpEG2UaQ’
‘~/tmp/scratch/RtmpF5quef’ ‘~/tmp/scratch/RtmpGTUXQN’
‘~/tmp/scratch/RtmpHC2wk3’ ‘~/tmp/scratch/RtmpHF75H0’
‘~/tmp/scratch/RtmpHZMVNN’ ‘~/tmp/scratch/RtmpHuPn2M’
‘~/tmp/scratch/RtmpIJnSSy’ ‘~/tmp/scratch/RtmpInFRDK’
‘~/tmp/scratch/RtmpJ1k1lU’ ‘~/tmp/scratch/RtmpJMzwIg’
‘~/tmp/scratch/RtmpKXiWTt’ ‘~/tmp/scratch/RtmpKoQ9f8’
‘~/tmp/scratch/RtmpLi5IIP’ ‘~/tmp/scratch/RtmpLyK9U0’
‘~/tmp/scratch/RtmpNLb74r’ ‘~/tmp/scratch/RtmpNx7mzM’
‘~/tmp/scratch/RtmpOD1Qf5’ ‘~/tmp/scratch/RtmpOH0dth’
‘~/tmp/scratch/RtmpPGDtPg’ ‘~/tmp/scratch/RtmpPHyuPO’
‘~/tmp/scratch/RtmpPX4zAY’ ‘~/tmp/scratch/RtmpPb295v’
‘~/tmp/scratch/RtmpPiRNt0’ ‘~/tmp/scratch/RtmpQZ8wJD’
‘~/tmp/scratch/RtmpRqEok5’ ‘~/tmp/scratch/RtmpSTigz9’
‘~/tmp/scratch/RtmpSm83ZR’ ‘~/tmp/scratch/RtmpT2u8ZB’
‘~/tmp/scratch/RtmpTOBxCT’ ‘~/tmp/scratch/RtmpTiM6jl’
‘~/tmp/scratch/RtmpTzzak9’ ‘~/tmp/scratch/RtmpU74sCw’
‘~/tmp/scratch/RtmpU9bP1w’ ‘~/tmp/scratch/RtmpUnnkGp’
‘~/tmp/scratch/RtmpVwuBwe’ ‘~/tmp/scratch/RtmpWDxGg6’
‘~/tmp/scratch/RtmpXJi8tF’ ‘~/tmp/scratch/RtmpXwHxG0’
‘~/tmp/scratch/RtmpZ17zfb’ ‘~/tmp/scratch/RtmpZ8wp7P’
‘~/tmp/scratch/RtmpZddHxR’ ‘~/tmp/scratch/RtmpaH7i7D’
‘~/tmp/scratch/RtmpaPCPgg’ ‘~/tmp/scratch/RtmpbjgUcT’
‘~/tmp/scratch/Rtmpc0DD45’ ‘~/tmp/scratch/Rtmpc1u6M3’
‘~/tmp/scratch/Rtmpc54llf’ ‘~/tmp/scratch/Rtmpd3fsvP’
‘~/tmp/scratch/Rtmpd5Qo7o’ ‘~/tmp/scratch/RtmpdI2cXX’
‘~/tmp/scratch/RtmpdK4ShC’ ‘~/tmp/scratch/RtmpdrGywe’
‘~/tmp/scratch/RtmpdrTerS’ ‘~/tmp/scratch/RtmpegqgFR’
‘~/tmp/scratch/Rtmpf5uH8P’ ‘~/tmp/scratch/RtmpfRaq9R’
‘~/tmp/scratch/RtmpfdiCSd’ ‘~/tmp/scratch/Rtmpg3IvWH’
‘~/tmp/scratch/Rtmpgrd7B3’ ‘~/tmp/scratch/Rtmpgxyz83’
‘~/tmp/scratch/Rtmpi4GdXJ’ ‘~/tmp/scratch/RtmpilEKjr’
‘~/tmp/scratch/RtmpizZRfi’ ‘~/tmp/scratch/RtmpjVcOtF’
‘~/tmp/scratch/RtmpkjsfsC’ ‘~/tmp/scratch/Rtmpl3RzRS’
‘~/tmp/scratch/Rtmpl5m8AV’ ‘~/tmp/scratch/Rtmplbawqu’
‘~/tmp/scratch/Rtmplqaamb’ ‘~/tmp/scratch/Rtmpm8ZUBI’
‘~/tmp/scratch/RtmpmWtxJx’ ‘~/tmp/scratch/RtmpmtmHy5’
‘~/tmp/scratch/Rtmpmw9qIc’ ‘~/tmp/scratch/RtmpnZBU8M’
‘~/tmp/scratch/RtmpndBSPS’ ‘~/tmp/scratch/Rtmpo9CSlY’
‘~/tmp/scratch/RtmpoPvswG’ ‘~/tmp/scratch/RtmppC6xgT’
‘~/tmp/scratch/RtmppHRNqy’ ‘~/tmp/scratch/RtmppHgk1G’
‘~/tmp/scratch/RtmppIjAdi’ ‘~/tmp/scratch/RtmppqMem3’
‘~/tmp/scratch/RtmpptGOVB’ ‘~/tmp/scratch/RtmpqNuZAu’
‘~/tmp/scratch/RtmprbyC7t’ ‘~/tmp/scratch/Rtmps0CZTh’
‘~/tmp/scratch/RtmpsTg2kf’ ‘~/tmp/scratch/RtmpsjQoB7’
‘~/tmp/scratch/RtmptKfKLV’ ‘~/tmp/scratch/RtmptfF0cu’
‘~/tmp/scratch/RtmptuNP5f’ ‘~/tmp/scratch/RtmpuKNjc0’
‘~/tmp/scratch/Rtmpv6JsbA’ ‘~/tmp/scratch/RtmpvGY7ya’
‘~/tmp/scratch/RtmpvSMrBm’ ‘~/tmp/scratch/Rtmpw1cl2W’
‘~/tmp/scratch/RtmpwAOty3’ ‘~/tmp/scratch/RtmpxNhlsc’
‘~/tmp/scratch/RtmpxXKAp6’ ‘~/tmp/scratch/RtmpxZgAZ4’
‘~/tmp/scratch/Rtmpxy5h8U’ ‘~/tmp/scratch/Rtmpy6yHZ6’
‘~/tmp/scratch/RtmpyVtjA7’ ‘~/tmp/scratch/RtmpzGQ4B0’
‘~/tmp/scratch/RtmpzU4Ypi’ ‘~/tmp/scratch/RtmpzVkD3t’
‘~/tmp/scratch/cc6Vln72.s’
‘~/tmp/scratch/quarto-sessioncb5ab59cad72e2af’
‘~/tmp/scratch/xvfb-run.0bBDST’ ‘~/tmp/scratch/xvfb-run.1tlFIu’
‘~/tmp/scratch/xvfb-run.2gyItS’ ‘~/tmp/scratch/xvfb-run.38fanM’
‘~/tmp/scratch/xvfb-run.4dGhxg’ ‘~/tmp/scratch/xvfb-run.57S9o5’
‘~/tmp/scratch/xvfb-run.60PpoH’ ‘~/tmp/scratch/xvfb-run.6MGbbz’
‘~/tmp/scratch/xvfb-run.76YxxF’ ‘~/tmp/scratch/xvfb-run.7BCf22’
‘~/tmp/scratch/xvfb-run.7zyK1D’ ‘~/tmp/scratch/xvfb-run.88PKJU’
‘~/tmp/scratch/xvfb-run.8S25Sk’ ‘~/tmp/scratch/xvfb-run.8d6BPg’
‘~/tmp/scratch/xvfb-run.AhyFKn’ ‘~/tmp/scratch/xvfb-run.AntHmQ’
‘~/tmp/scratch/xvfb-run.BW4rKU’ ‘~/tmp/scratch/xvfb-run.C6XOEq’
‘~/tmp/scratch/xvfb-run.CK4XAf’ ‘~/tmp/scratch/xvfb-run.CVnzXD’
‘~/tmp/scratch/xvfb-run.CzNmDw’ ‘~/tmp/scratch/xvfb-run.DPVjUs’
‘~/tmp/scratch/xvfb-run.E1fnRn’ ‘~/tmp/scratch/xvfb-run.GIheSG’
‘~/tmp/scratch/xvfb-run.H1mr7Y’ ‘~/tmp/scratch/xvfb-run.I4dYd7’
‘~/tmp/scratch/xvfb-run.LIuPVE’ ‘~/tmp/scratch/xvfb-run.LfqMtu’
‘~/tmp/scratch/xvfb-run.M2BWBN’ ‘~/tmp/scratch/xvfb-run.OHFdVk’
‘~/tmp/scratch/xvfb-run.Ol8WTo’ ‘~/tmp/scratch/xvfb-run.PE5VQi’
‘~/tmp/scratch/xvfb-run.R7PZOB’ ‘~/tmp/scratch/xvfb-run.SSU3lr’
‘~/tmp/scratch/xvfb-run.TEx34p’ ‘~/tmp/scratch/xvfb-run.TWLbkk’
‘~/tmp/scratch/xvfb-run.USdRPB’ ‘~/tmp/scratch/xvfb-run.UezOd2’
‘~/tmp/scratch/xvfb-run.UvtYq9’ ‘~/tmp/scratch/xvfb-run.VgCuN3’
‘~/tmp/scratch/xvfb-run.WxgwcV’ ‘~/tmp/scratch/xvfb-run.XycxRr’
‘~/tmp/scratch/xvfb-run.YjpBfG’ ‘~/tmp/scratch/xvfb-run.aQNiyu’
‘~/tmp/scratch/xvfb-run.amuPjL’ ‘~/tmp/scratch/xvfb-run.bCNTcj’
‘~/tmp/scratch/xvfb-run.gYIFHs’ ‘~/tmp/scratch/xvfb-run.hMQVhu’
‘~/tmp/scratch/xvfb-run.iHLlD5’ ‘~/tmp/scratch/xvfb-run.iaS38F’
‘~/tmp/scratch/xvfb-run.iiLhcM’ ‘~/tmp/scratch/xvfb-run.imBwBL’
‘~/tmp/scratch/xvfb-run.j23Ahk’ ‘~/tmp/scratch/xvfb-run.lVZAc7’
‘~/tmp/scratch/xvfb-run.lnlENu’ ‘~/tmp/scratch/xvfb-run.mZMfOi’
‘~/tmp/scratch/xvfb-run.nDSOLm’ ‘~/tmp/scratch/xvfb-run.nfeGd0’
‘~/tmp/scratch/xvfb-run.qJNoAL’ ‘~/tmp/scratch/xvfb-run.rIhSwa’
‘~/tmp/scratch/xvfb-run.uGtFrs’ ‘~/tmp/scratch/xvfb-run.wNERLL’
‘~/tmp/scratch/xvfb-run.wrUkkN’ ‘~/tmp/scratch/xvfb-run.xWNnps’
‘~/tmp/scratch/xvfb-run.zhdOTV’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [126s/165s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [48s/55s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.13
Check: tests
Result: ERROR
Running 'testthat.R' [72s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [77s/99s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [76s/113s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running 'testthat.R' [73s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running 'testthat.R' [111s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64