Last updated on 2026-10-24 15:51:38 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.0 | 24.33 | 307.01 | 331.34 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.4.0 | 17.81 | 208.72 | 226.53 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.4.0 | 21.00 | 243.53 | 264.53 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.4.0 | 19.00 | 207.67 | 226.67 | OK | |
| r-devel-windows-x86_64 | 1.4.0 | 33.00 | 314.00 | 347.00 | OK | |
| r-patched-linux-x86_64 | 1.4.0 | 28.02 | 287.58 | 315.60 | OK | |
| r-release-linux-x86_64 | 1.4.0 | 25.14 | 289.81 | 314.95 | OK | |
| r-release-macos-arm64 | 1.4.0 | 7.00 | 68.00 | 75.00 | OK | |
| r-release-macos-x86_64 | 1.4.0 | 19.00 | 297.00 | 316.00 | OK | |
| r-release-windows-x86_64 | 1.4.0 | 30.00 | 285.00 | 315.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.4.0 | 16.00 | 233.00 | 249.00 | OK | |
| r-oldrel-windows-x86_64 | 1.4.0 | 42.00 | 378.00 | 420.00 | OK |
Version: 1.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Pool_Model_Performance.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘Pool_Model_Performance.Rmd’
--- re-building ‘Pooling_AUC_values.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘Pooling_AUC_values.Rmd’
--- re-building ‘psfmi_CoxModels.Rmd’ using rmarkdown
Quitting from psfmi_CoxModels.Rmd:136-150 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─psfmi::psfmi_coxr(...)
2. └─psfmi::psfmi_coxr_fw(...)
3. ├─car::Anova(fit[[i]])
4. └─car:::Anova.coxph(fit[[i]])
5. └─car:::Anova_II_LR_coxph(mod)
6. ├─car:::df.terms(mod)
7. ├─car:::df.terms.default(mod)
8. │ └─base::Recall(model, term)
9. └─car:::df.terms.default(mod)
10. ├─stats::model.matrix(model)
11. └─survival:::model.matrix.coxph(model)
12. └─stats::delete.response(object$terms)
13. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'psfmi_CoxModels.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘psfmi_CoxModels.Rmd’
--- re-building ‘psfmi_LinearModels.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘psfmi_LinearModels.Rmd’
--- re-building ‘psfmi_LogisticModels.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘psfmi_LogisticModels.Rmd’
--- re-building ‘psfmi_mice.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘psfmi_mice.Rmd’
SUMMARY: processing the following file failed:
‘psfmi_CoxModels.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc