Last updated on 2026-10-24 21:51:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.8.2 | 28.73 | 250.06 | 278.79 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.8.2 | 21.55 | 156.60 | 178.15 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.8.2 | 25.00 | 186.67 | 211.67 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.8.2 | 22.00 | 158.30 | 180.30 | OK | |
| r-devel-windows-x86_64 | 1.8.2 | 37.00 | 251.00 | 288.00 | OK | |
| r-patched-linux-x86_64 | 1.8.2 | 32.70 | 238.63 | 271.33 | OK | |
| r-release-linux-x86_64 | 1.8.2 | 30.37 | 239.56 | 269.93 | OK | |
| r-release-macos-arm64 | 1.8.2 | 8.00 | 55.00 | 63.00 | OK | |
| r-release-macos-x86_64 | 1.8.2 | 22.00 | 273.00 | 295.00 | OK | |
| r-release-windows-x86_64 | 1.8.2 | 34.00 | 241.00 | 275.00 | OK | |
| r-oldrel-macos-arm64 | 1.8.2 | 5.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.8.2 | 21.00 | 189.00 | 210.00 | OK | |
| r-oldrel-windows-x86_64 | 1.8.2 | 45.00 | 316.00 | 361.00 | OK |
Version: 1.8.2
Check: examples
Result: ERROR
Running examples in ‘plsRcox-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cv.autoplsRcox
> ### Title: Cross-validating an autoplsRcox-Model
> ### Aliases: cv.autoplsRcox
> ### Keywords: models regression
>
> ### ** Examples
>
>
> data(micro.censure)
> data(Xmicro.censure_compl_imp)
> set.seed(123456)
> X_train_micro <- apply((as.matrix(Xmicro.censure_compl_imp)),FUN="as.numeric",MARGIN=2)[1:80,]
> X_train_micro_df <- data.frame(X_train_micro)
> Y_train_micro <- micro.censure$survyear[1:80]
> C_train_micro <- micro.censure$DC[1:80]
>
> #Should be run with a higher value of nt (at least 10)
> (cv.autoplsRcox.res=cv.autoplsRcox(list(x=X_train_micro,time=Y_train_micro,
+ status=C_train_micro),nt=3,verbose=FALSE))
Error in a$specials[[i]] : subscript out of bounds
Calls: cv.autoplsRcox ... model.matrix -> model.matrix.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.8.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(plsRcox)
>
> test_check("plsRcox")
Saving _problems/test-predict-coxdrmodels-10.R
Saving _problems/test-predict-plsRcoxmodel-7.R
Saving _problems/test-predict-plsRcoxmodel-21.R
Saving _problems/test-predict-plsRcoxmodel-38.R
Saving _problems/test-predict-plsRcoxmodel-65.R
[ FAIL 5 | WARN 0 | SKIP 3 | PASS 76 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• {spls} is not installed (3): 'test-behavior-coxsplsDR.R:5:3',
'test-predict-coxdrmodels.R:26:3', 'test-predict-coxdrmodels.R:42:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-predict-coxdrmodels.R:10:3'): coxplsDR allres objects predict from original covariates ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─stats::predict(...) at test-predict-coxdrmodels.R:10:3
2. ├─stats::predict(...)
3. └─survival:::predict.coxph(...)
4. └─stats::delete.response(Terms)
5. └─stats (local) off(a$specials[[i]])
── Error ('test-predict-plsRcoxmodel.R:7:3'): predict.plsRcoxmodel supports expected predictions on training subsets ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─plsRcox::plsRcox(...) at test-predict-plsRcoxmodel.R:7:3
2. └─plsRcox:::plsRcoxmodel.default(...)
3. ├─base::as.matrix(predict(tempregcox, type = "expected"))
4. ├─stats::predict(tempregcox, type = "expected")
5. ├─stats::predict(tempregcox, type = "expected")
6. └─survival:::predict.coxph(tempregcox, type = "expected")
7. ├─stats::model.matrix(object, data = mf)
8. └─survival:::model.matrix.coxph(object, data = mf)
9. └─stats::delete.response(object$terms)
10. └─stats (local) off(a$specials[[i]])
── Error ('test-predict-plsRcoxmodel.R:21:3'): predict.plsRcoxmodel matches unnamed training subsets for expected predictions ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─plsRcox::plsRcox(...) at test-predict-plsRcoxmodel.R:21:3
2. └─plsRcox:::plsRcoxmodel.default(...)
3. ├─base::as.matrix(predict(tempregcox, type = "expected"))
4. ├─stats::predict(tempregcox, type = "expected")
5. ├─stats::predict(tempregcox, type = "expected")
6. └─survival:::predict.coxph(tempregcox, type = "expected")
7. ├─stats::model.matrix(object, data = mf)
8. └─survival:::model.matrix.coxph(object, data = mf)
9. └─stats::delete.response(object$terms)
10. └─stats (local) off(a$specials[[i]])
── Error ('test-predict-plsRcoxmodel.R:38:3'): predict.plsRcoxmodel can use an explicit Surv response for new expected predictions ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─plsRcox::plsRcox(...) at test-predict-plsRcoxmodel.R:38:3
2. └─plsRcox:::plsRcoxmodel.default(...)
3. ├─base::as.matrix(predict(tempregcox, type = "expected"))
4. ├─stats::predict(tempregcox, type = "expected")
5. ├─stats::predict(tempregcox, type = "expected")
6. └─survival:::predict.coxph(tempregcox, type = "expected")
7. ├─stats::model.matrix(object, data = mf)
8. └─survival:::model.matrix.coxph(object, data = mf)
9. └─stats::delete.response(object$terms)
10. └─stats (local) off(a$specials[[i]])
── Error ('test-predict-plsRcoxmodel.R:65:3'): predict.plsRcoxmodel forwards reference to predict.coxph ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─plsRcox::plsRcox(...) at test-predict-plsRcoxmodel.R:65:3
2. └─plsRcox:::plsRcoxmodel.default(...)
3. ├─base::as.matrix(predict(tempregcox, type = "expected"))
4. ├─stats::predict(tempregcox, type = "expected")
5. ├─stats::predict(tempregcox, type = "expected")
6. └─survival:::predict.coxph(tempregcox, type = "expected")
7. ├─stats::model.matrix(object, data = mf)
8. └─survival:::model.matrix.coxph(object, data = mf)
9. └─stats::delete.response(object$terms)
10. └─stats (local) off(a$specials[[i]])
[ FAIL 5 | WARN 0 | SKIP 3 | PASS 76 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.8.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘survcomp’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64