Last updated on 2026-10-24 15:51:35 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.5.5.1 | 6.82 | 72.01 | 78.83 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.5.5.1 | 5.38 | 54.02 | 59.40 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.5.5.1 | 78.52 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.5.5.1 | 59.01 | OK | |||
| r-devel-windows-x86_64 | 1.5.5.1 | 8.00 | 87.00 | 95.00 | OK | |
| r-patched-linux-x86_64 | 1.5.5.1 | 7.07 | 65.09 | 72.16 | OK | |
| r-release-linux-x86_64 | 1.5.5.1 | 7.01 | 64.98 | 71.99 | OK | |
| r-release-macos-arm64 | 1.5.5.1 | 2.00 | 22.00 | 24.00 | OK | |
| r-release-macos-x86_64 | 1.5.5.1 | 5.00 | 83.00 | 88.00 | OK | |
| r-release-windows-x86_64 | 1.5.5.1 | 8.00 | 77.00 | 85.00 | OK | |
| r-oldrel-macos-arm64 | 1.5.5.1 | OK | ||||
| r-oldrel-macos-x86_64 | 1.5.5.1 | 5.00 | 75.00 | 80.00 | OK | |
| r-oldrel-windows-x86_64 | 1.5.5.1 | 11.00 | 94.00 | 105.00 | OK |
Version: 1.5.5.1
Check: examples
Result: ERROR
Running examples in ‘mfp-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mfp
> ### Title: Fit a Multiple Fractional Polynomial Model
> ### Aliases: mfp
> ### Keywords: models
>
> ### ** Examples
>
> data(GBSG)
> f <- mfp(Surv(rfst, cens) ~ fp(age, df = 4, select = 0.05)
+ + fp(prm, df = 4, select = 0.05), family = cox, data = GBSG)
> print(f)
Call:
mfp(formula = Surv(rfst, cens) ~ fp(age, df = 4, select = 0.05) +
fp(prm, df = 4, select = 0.05), data = GBSG, family = cox)
Deviance table:
Resid. Dev
Null model 3576.209
Linear model 3541.926
Final model 3507.883
Fractional polynomials:
df.initial select alpha df.final power1 power2
prm 4 0.05 0.05 2 0 .
age 4 0.05 0.05 4 -2 -0.5
Transformations of covariates:
formula
age I((age/100)^-2)+I((age/100)^-0.5)
prm log(((prm+1)/100))
coef exp(coef) se(coef) z p
prm.1 -0.215 0.806516 0.02980 -7.216 5.37e-13
age.1 0.407 1.502306 0.08335 4.883 1.04e-06
age.2 -4.960 0.007011 1.24620 -3.980 6.88e-05
Likelihood ratio test=68.33 on 3 df, p=9.77e-15 n= 686
> survfit(f$fit) # use proposed coxph model fit for survival curve estimation
Error in a$specials[[i]] : subscript out of bounds
Calls: survfit ... survfit.coxph -> model.matrix.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.5.5.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘mfp_vignette.Rmd’ using rmarkdown
Quitting from mfp_vignette.Rmd:207-210 [fig1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. ├─survival::survfit(f$fit)
2. └─survival:::survfit.coxph(f$fit)
3. └─survival:::model.matrix.coxph(object, data = mf)
4. └─stats::delete.response(object$terms)
5. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mfp_vignette.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘mfp_vignette.Rmd’
SUMMARY: processing the following file failed:
‘mfp_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc