Last updated on 2026-10-24 15:51:34 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.4 | 613.49 | 320.06 | 933.55 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.4 | 622.16 | 220.24 | 842.40 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.4 | 309.00 | 238.09 | 547.09 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.4 | 685.00 | 207.74 | 892.74 | OK | |
| r-devel-windows-x86_64 | 0.3.4 | 684.00 | 521.00 | 1205.00 | OK | |
| r-patched-linux-x86_64 | 0.3.4 | 864.86 | 311.89 | 1176.75 | OK | |
| r-release-linux-x86_64 | 0.3.4 | 828.91 | 315.04 | 1143.95 | OK | |
| r-release-macos-arm64 | 0.3.4 | 118.00 | -14.00 | 104.00 | OK | |
| r-release-macos-x86_64 | 0.3.4 | 393.00 | 173.00 | 566.00 | OK | |
| r-release-windows-x86_64 | 0.3.4 | 657.00 | 473.00 | 1130.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.4 | 111.00 | -11.00 | 100.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.4 | 398.00 | 127.00 | 525.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.4 | 929.00 | 533.00 | 1462.00 | OK |
Version: 0.3.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lrstat)
>
> test_check("lrstat")
WARNING: The required information cannot be attained by increasing followupTime alone. accrualDuration is also increased to attain the required information.
Loading required package: shiny
Loading required package: ggplot2
Attaching package: 'plotly'
The following object is masked from 'package:ggplot2':
last_plot
The following object is masked from 'package:stats':
filter
The following object is masked from 'package:graphics':
layout
Saving _problems/test-survival-diagnostics-419.R
Saving _problems/test-survival-diagnostics-489.R
Saving _problems/test-survival-diagnostics-526.R
Saving _problems/test-survival-diagnostics-563.R
Saving _problems/test-survival-diagnostics-631.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1200 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-survival-diagnostics.R:419:7'): residuals_phregr: right-censored data with covariates ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─stats::resid(fit2, type = type) at test-survival-diagnostics.R:419:7
2. └─survival:::residuals.coxph(fit2, type = type)
3. └─survival:::coxph.getdata(object, y = TRUE, x = TRUE, stratax = TRUE)
4. ├─stats::model.matrix(fit, data = mf)
5. └─survival:::model.matrix.coxph(fit, data = mf)
6. └─stats::delete.response(object$terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-survival-diagnostics.R:489:7'): residuals_phregr: counting process data with covariates ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─stats::resid(fit2, type = type) at test-survival-diagnostics.R:489:7
2. └─survival:::residuals.coxph(fit2, type = type)
3. └─survival:::coxph.getdata(object, y = TRUE, x = TRUE, stratax = TRUE)
4. ├─stats::model.matrix(fit, data = mf)
5. └─survival:::model.matrix.coxph(fit, data = mf)
6. └─stats::delete.response(object$terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-survival-diagnostics.R:526:3'): survfit_phregr: right-censored data ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─survival::survfit(fit2, newdata = temp, conf.type = "log-log") at test-survival-diagnostics.R:526:3
2. └─survival:::survfit.coxph(fit2, newdata = temp, conf.type = "log-log")
3. └─survival:::model.matrix.coxph(object, data = mf)
4. └─stats::delete.response(object$terms)
5. └─stats (local) off(a$specials[[i]])
── Error ('test-survival-diagnostics.R:563:3'): survfit_phregr: stratified analysis ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─survival::survfit(fit2, newdata = temp2, conf.type = "log-log") at test-survival-diagnostics.R:563:3
2. └─survival:::survfit.coxph(fit2, newdata = temp2, conf.type = "log-log")
3. └─survival:::model.matrix.coxph(object, data = mf)
4. └─stats::delete.response(object$terms)
5. └─stats (local) off(a$specials[[i]])
── Error ('test-survival-diagnostics.R:631:3'): survfit_phregr: time-dependent covariates ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─survival::survfit(fit2, newdata = temp, id = id, conf.type = "log-log") at test-survival-diagnostics.R:631:3
2. └─survival:::survfit.coxph(fit2, newdata = temp, id = id, conf.type = "log-log")
3. └─survival:::model.matrix.coxph(object, data = mf)
4. └─stats::delete.response(object$terms)
5. └─stats (local) off(a$specials[[i]])
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1200 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc