Last updated on 2026-08-01 18:50:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 48.38 | 581.52 | 629.90 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 36.17 | 414.61 | 450.78 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 88.00 | 983.29 | 1071.29 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 39.00 | 415.84 | 454.84 | OK | |
| r-devel-windows-x86_64 | 0.1.2 | 49.00 | 462.00 | 511.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 44.42 | 561.08 | 605.50 | OK | |
| r-release-linux-x86_64 | 0.1.2 | 49.12 | 566.15 | 615.27 | OK | |
| r-release-macos-arm64 | 0.1.2 | 14.00 | 146.00 | 160.00 | OK | |
| r-release-macos-x86_64 | 0.1.2 | 34.00 | 562.00 | 596.00 | OK | |
| r-release-windows-x86_64 | 0.1.2 | 49.00 | 466.00 | 515.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | 14.00 | 107.00 | 121.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.1.2 | 34.00 | 516.00 | 550.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.1.2 | 74.00 | 688.00 | 762.00 | OK |
Version: 0.1.2
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp02zYvx’ ‘~/tmp/scratch/Rtmp0BbpDj’
‘~/tmp/scratch/Rtmp0lODm2’ ‘~/tmp/scratch/Rtmp1O4nkX’
‘~/tmp/scratch/Rtmp1VmCwz’ ‘~/tmp/scratch/Rtmp1iZntw’
‘~/tmp/scratch/Rtmp1qhQnW’ ‘~/tmp/scratch/Rtmp2SCIiT’
‘~/tmp/scratch/Rtmp2gtjfz’ ‘~/tmp/scratch/Rtmp3LEIrR’
‘~/tmp/scratch/Rtmp3LnWQB’ ‘~/tmp/scratch/Rtmp3R65da’
‘~/tmp/scratch/Rtmp3qTMk0’ ‘~/tmp/scratch/Rtmp4V3jjn’
‘~/tmp/scratch/Rtmp4Yha2W’ ‘~/tmp/scratch/Rtmp4jCxxi’
‘~/tmp/scratch/Rtmp50M5hP’ ‘~/tmp/scratch/Rtmp6uNOs0’
‘~/tmp/scratch/Rtmp6uu2yu’ ‘~/tmp/scratch/Rtmp774nRz’
‘~/tmp/scratch/Rtmp7JbQvD’ ‘~/tmp/scratch/Rtmp8Phq5o’
‘~/tmp/scratch/Rtmp8owsJf’ ‘~/tmp/scratch/Rtmp8rIJrX’
‘~/tmp/scratch/Rtmp9Yrgfy’ ‘~/tmp/scratch/Rtmp9lS8Qa’
‘~/tmp/scratch/Rtmp9yK51W’ ‘~/tmp/scratch/RtmpASQLDk’
‘~/tmp/scratch/RtmpAqs6uL’ ‘~/tmp/scratch/RtmpB16AGT’
‘~/tmp/scratch/RtmpB74W2S’ ‘~/tmp/scratch/RtmpBdsu6s’
‘~/tmp/scratch/RtmpBoxJeT’ ‘~/tmp/scratch/RtmpCZDW3l’
‘~/tmp/scratch/RtmpCZDc5v’ ‘~/tmp/scratch/RtmpCmKZPf’
‘~/tmp/scratch/RtmpCnyxd7’ ‘~/tmp/scratch/RtmpD9LbIN’
‘~/tmp/scratch/RtmpDQMkYM’ ‘~/tmp/scratch/RtmpDTM8Hw’
‘~/tmp/scratch/RtmpDxdsl3’ ‘~/tmp/scratch/RtmpE9NGj1’
‘~/tmp/scratch/RtmpFQUwo9’ ‘~/tmp/scratch/RtmpFTtaP0’
‘~/tmp/scratch/RtmpFVUUZ9’ ‘~/tmp/scratch/RtmpG4IBjk’
‘~/tmp/scratch/RtmpG6dPcy’ ‘~/tmp/scratch/RtmpGUUNm2’
‘~/tmp/scratch/RtmpGs4HEH’ ‘~/tmp/scratch/RtmpGvfq8o’
‘~/tmp/scratch/RtmpH6ULT3’ ‘~/tmp/scratch/RtmpHGcIUv’
‘~/tmp/scratch/RtmpHHoJI1’ ‘~/tmp/scratch/RtmpHM01qA’
‘~/tmp/scratch/RtmpI4q8Oh’ ‘~/tmp/scratch/RtmpIJXZia’
‘~/tmp/scratch/RtmpIrREiw’ ‘~/tmp/scratch/RtmpIta5eF’
‘~/tmp/scratch/RtmpJR9Nkw’ ‘~/tmp/scratch/RtmpJdLhB4’
‘~/tmp/scratch/RtmpJjdN63’ ‘~/tmp/scratch/RtmpJx7YPR’
‘~/tmp/scratch/RtmpKz7pFD’ ‘~/tmp/scratch/RtmpL2LAu7’
‘~/tmp/scratch/RtmpL4lN2x’ ‘~/tmp/scratch/RtmpLOJztA’
‘~/tmp/scratch/RtmpLTZjWy’ ‘~/tmp/scratch/RtmpLwatot’
‘~/tmp/scratch/RtmpM3liRK’ ‘~/tmp/scratch/RtmpMYg886’
‘~/tmp/scratch/RtmpMiMElK’ ‘~/tmp/scratch/RtmpN37FfC’
‘~/tmp/scratch/RtmpN56RQ4’ ‘~/tmp/scratch/RtmpND1D2N’
‘~/tmp/scratch/RtmpNi9Kgo’ ‘~/tmp/scratch/RtmpOJ7zWk’
‘~/tmp/scratch/RtmpOTt32P’ ‘~/tmp/scratch/RtmpOhVkIK’
‘~/tmp/scratch/RtmpPIdyJh’ ‘~/tmp/scratch/RtmpPPCf84’
‘~/tmp/scratch/RtmpPrCTa8’ ‘~/tmp/scratch/RtmpQIW080’
‘~/tmp/scratch/RtmpQykBry’ ‘~/tmp/scratch/RtmpRBnFD3’
‘~/tmp/scratch/RtmpRFF0G8’ ‘~/tmp/scratch/RtmpRjGtPg’
‘~/tmp/scratch/RtmpRlq36G’ ‘~/tmp/scratch/RtmpS0Vr2V’
‘~/tmp/scratch/RtmpSsc6dG’ ‘~/tmp/scratch/RtmpTQZJt3’
‘~/tmp/scratch/RtmpTULrdt’ ‘~/tmp/scratch/RtmpU1DYI7’
‘~/tmp/scratch/RtmpU6u5Gs’ ‘~/tmp/scratch/RtmpUP61Zr’
‘~/tmp/scratch/RtmpURZ0oY’ ‘~/tmp/scratch/RtmpUioiIf’
‘~/tmp/scratch/RtmpV64b64’ ‘~/tmp/scratch/RtmpWFoQix’
‘~/tmp/scratch/RtmpX7rLZQ’ ‘~/tmp/scratch/RtmpX9R5nO’
‘~/tmp/scratch/RtmpXRm0LY’ ‘~/tmp/scratch/RtmpXRq8hr’
‘~/tmp/scratch/RtmpXU5DuT’ ‘~/tmp/scratch/RtmpY1FFHY’
‘~/tmp/scratch/RtmpYopSNH’ ‘~/tmp/scratch/Rtmpa1aKft’
‘~/tmp/scratch/RtmpaLByWz’ ‘~/tmp/scratch/RtmparNqIK’
‘~/tmp/scratch/Rtmpas2GgD’ ‘~/tmp/scratch/RtmpbGPBsr’
‘~/tmp/scratch/RtmpbIKMeY’ ‘~/tmp/scratch/RtmpbXtCqh’
‘~/tmp/scratch/RtmpbaArbR’ ‘~/tmp/scratch/RtmpcH3MHx’
‘~/tmp/scratch/RtmpcQqmmS’ ‘~/tmp/scratch/Rtmpcuik5F’
‘~/tmp/scratch/Rtmpd6Nh1y’ ‘~/tmp/scratch/Rtmpds2tRO’
‘~/tmp/scratch/Rtmpe4Sos3’ ‘~/tmp/scratch/RtmpeGgihM’
‘~/tmp/scratch/RtmpeZqr5Y’ ‘~/tmp/scratch/RtmpezGBTR’
‘~/tmp/scratch/Rtmpf34NCE’ ‘~/tmp/scratch/RtmpfrE5JJ’
‘~/tmp/scratch/RtmphaF9Yf’ ‘~/tmp/scratch/RtmphyMkei’
‘~/tmp/scratch/Rtmpi5D34o’ ‘~/tmp/scratch/RtmpiSQyW7’
‘~/tmp/scratch/RtmpiajZND’ ‘~/tmp/scratch/Rtmpj4EKhd’
‘~/tmp/scratch/RtmpjSf0L8’ ‘~/tmp/scratch/RtmpjpIzfX’
‘~/tmp/scratch/RtmpktVQzS’ ‘~/tmp/scratch/RtmpnAxlQB’
‘~/tmp/scratch/RtmpnZ3Cea’ ‘~/tmp/scratch/RtmpnnmTrx’
‘~/tmp/scratch/RtmpoCcH9D’ ‘~/tmp/scratch/RtmpoDPMAm’
‘~/tmp/scratch/RtmpoaGbo8’ ‘~/tmp/scratch/RtmpofCfEy’
‘~/tmp/scratch/Rtmpp1QHaC’ ‘~/tmp/scratch/RtmppxYhi9’
‘~/tmp/scratch/RtmpqFtrs0’ ‘~/tmp/scratch/Rtmpqc6exV’
‘~/tmp/scratch/RtmpqrtMRA’ ‘~/tmp/scratch/RtmprR1bQL’
‘~/tmp/scratch/Rtmps8R5uJ’ ‘~/tmp/scratch/RtmpsXN64B’
‘~/tmp/scratch/RtmpsYIKrr’ ‘~/tmp/scratch/RtmpsqGsoB’
‘~/tmp/scratch/Rtmpt8QerQ’ ‘~/tmp/scratch/Rtmpt9BwYo’
‘~/tmp/scratch/RtmptZwIud’ ‘~/tmp/scratch/Rtmpu1gK7p’
‘~/tmp/scratch/Rtmpu5swxn’ ‘~/tmp/scratch/RtmpuOjoUH’
‘~/tmp/scratch/RtmpuZW5Hs’ ‘~/tmp/scratch/RtmpumABy5’
‘~/tmp/scratch/Rtmpux86WV’ ‘~/tmp/scratch/Rtmpv9loao’
‘~/tmp/scratch/RtmpvEP1s0’ ‘~/tmp/scratch/RtmpvVx921’
‘~/tmp/scratch/RtmpwH4HAN’ ‘~/tmp/scratch/RtmpwPisIm’
‘~/tmp/scratch/RtmpwnA6lj’ ‘~/tmp/scratch/Rtmpwo0OYx’
‘~/tmp/scratch/Rtmpwra1yJ’ ‘~/tmp/scratch/RtmpxUiG0Y’
‘~/tmp/scratch/RtmpyAoxvt’ ‘~/tmp/scratch/RtmpybCcbm’
‘~/tmp/scratch/RtmpyqEIYr’ ‘~/tmp/scratch/Rtmpyyd5dp’
‘~/tmp/scratch/Rtmpz0gwVy’ ‘~/tmp/scratch/RtmpzRiXYV’
‘~/tmp/scratch/RtmpzpISBx’ ‘~/tmp/scratch/xvfb-run.0LaeYE’
‘~/tmp/scratch/xvfb-run.1EFuxd’ ‘~/tmp/scratch/xvfb-run.1rHoRg’
‘~/tmp/scratch/xvfb-run.4G8z9G’ ‘~/tmp/scratch/xvfb-run.4MkzfP’
‘~/tmp/scratch/xvfb-run.5UJ6XO’ ‘~/tmp/scratch/xvfb-run.60xc2x’
‘~/tmp/scratch/xvfb-run.6GvTiD’ ‘~/tmp/scratch/xvfb-run.6d5Cye’
‘~/tmp/scratch/xvfb-run.7TEem2’ ‘~/tmp/scratch/xvfb-run.7puiH4’
‘~/tmp/scratch/xvfb-run.844hOI’ ‘~/tmp/scratch/xvfb-run.8UqqX6’
‘~/tmp/scratch/xvfb-run.9qMLcm’ ‘~/tmp/scratch/xvfb-run.A1KdYR’
‘~/tmp/scratch/xvfb-run.AHuJJV’ ‘~/tmp/scratch/xvfb-run.AKV2KT’
‘~/tmp/scratch/xvfb-run.AtCwvG’ ‘~/tmp/scratch/xvfb-run.BthswI’
‘~/tmp/scratch/xvfb-run.CFS7pY’ ‘~/tmp/scratch/xvfb-run.Fxaa0g’
‘~/tmp/scratch/xvfb-run.I2hyO7’ ‘~/tmp/scratch/xvfb-run.IC5iLE’
‘~/tmp/scratch/xvfb-run.IDFAbP’ ‘~/tmp/scratch/xvfb-run.IayLUw’
‘~/tmp/scratch/xvfb-run.Jljcdp’ ‘~/tmp/scratch/xvfb-run.JqGjUN’
‘~/tmp/scratch/xvfb-run.K7JbwR’ ‘~/tmp/scratch/xvfb-run.KXBCGf’
‘~/tmp/scratch/xvfb-run.M0Jnap’ ‘~/tmp/scratch/xvfb-run.M5N0RK’
‘~/tmp/scratch/xvfb-run.Nm3dAk’ ‘~/tmp/scratch/xvfb-run.Obt1xg’
‘~/tmp/scratch/xvfb-run.OhZat1’ ‘~/tmp/scratch/xvfb-run.PwYPTI’
‘~/tmp/scratch/xvfb-run.QUatxB’ ‘~/tmp/scratch/xvfb-run.REOz0a’
‘~/tmp/scratch/xvfb-run.RPOCvD’ ‘~/tmp/scratch/xvfb-run.S7W3mB’
‘~/tmp/scratch/xvfb-run.SGHcCU’ ‘~/tmp/scratch/xvfb-run.TDXzCm’
‘~/tmp/scratch/xvfb-run.UdEXBu’ ‘~/tmp/scratch/xvfb-run.VJyGlS’
‘~/tmp/scratch/xvfb-run.VhsvR1’ ‘~/tmp/scratch/xvfb-run.WI9nqK’
‘~/tmp/scratch/xvfb-run.X8ExWA’ ‘~/tmp/scratch/xvfb-run.XN1Wbm’
‘~/tmp/scratch/xvfb-run.Xjjdy8’ ‘~/tmp/scratch/xvfb-run.XjzRx1’
‘~/tmp/scratch/xvfb-run.XkRnON’ ‘~/tmp/scratch/xvfb-run.YLSvSt’
‘~/tmp/scratch/xvfb-run.ZNos0v’ ‘~/tmp/scratch/xvfb-run.Zwgd3t’
‘~/tmp/scratch/xvfb-run.c2rqvp’ ‘~/tmp/scratch/xvfb-run.cJaXnM’
‘~/tmp/scratch/xvfb-run.crD0sJ’ ‘~/tmp/scratch/xvfb-run.emcixM’
‘~/tmp/scratch/xvfb-run.etW2kI’ ‘~/tmp/scratch/xvfb-run.fhFbKv’
‘~/tmp/scratch/xvfb-run.hcj9xm’ ‘~/tmp/scratch/xvfb-run.iMXpnB’
‘~/tmp/scratch/xvfb-run.ik9cP1’ ‘~/tmp/scratch/xvfb-run.iocz7J’
‘~/tmp/scratch/xvfb-run.j1k1H1’ ‘~/tmp/scratch/xvfb-run.jAQ1HD’
‘~/tmp/scratch/xvfb-run.jBftAf’ ‘~/tmp/scratch/xvfb-run.lIQqMC’
‘~/tmp/scratch/xvfb-run.m8RLAO’ ‘~/tmp/scratch/xvfb-run.oru72P’
‘~/tmp/scratch/xvfb-run.rKVZ3w’ ‘~/tmp/scratch/xvfb-run.rRX9m1’
‘~/tmp/scratch/xvfb-run.t76JdU’ ‘~/tmp/scratch/xvfb-run.uNFsKi’
‘~/tmp/scratch/xvfb-run.vAIgVY’ ‘~/tmp/scratch/xvfb-run.vYo5EA’
‘~/tmp/scratch/xvfb-run.wdF145’ ‘~/tmp/scratch/xvfb-run.wqpWVC’
‘~/tmp/scratch/xvfb-run.x7oiZy’ ‘~/tmp/scratch/xvfb-run.xjYsUk’
‘~/tmp/scratch/xvfb-run.ynXXIV’ ‘~/tmp/scratch/xvfb-run.yu6OfH’
‘~/tmp/scratch/xvfb-run.zuGrhD’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘lisat-intro.Rmd’ using rmarkdown
Quitting from lisat-intro.Rmd:107-111 [cis_analysis]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. └─lisat::CIS(IS_raw = IS_raw, connect_distance = 50000)
2. ├─IS_raw[, c("Locus", "Chr", "nearest_gene_name")]
3. └─base::`[.data.frame`(IS_raw, , c("Locus", "Chr", "nearest_gene_name"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'lisat-intro.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘lisat-intro.Rmd’
SUMMARY: processing the following file failed:
‘lisat-intro.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64