Last updated on 2026-10-24 09:50:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.6.0 | 36.62 | 561.61 | 598.23 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.6.0 | 21.43 | 361.82 | 383.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.6.0 | 24.00 | 2.56 | 26.56 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.6.0 | 26.00 | 404.16 | 430.16 | ERROR | |
| r-devel-windows-x86_64 | 1.6.0 | 32.00 | 567.00 | 599.00 | OK | |
| r-patched-linux-x86_64 | 1.6.0 | 32.95 | 535.60 | 568.55 | OK | |
| r-release-linux-x86_64 | 1.6.0 | 30.14 | 532.89 | 563.03 | OK | |
| r-release-macos-arm64 | 1.6.0 | 8.00 | 181.00 | 189.00 | OK | |
| r-release-macos-x86_64 | 1.6.0 | 27.00 | 673.00 | 700.00 | OK | |
| r-release-windows-x86_64 | 1.6.0 | 30.00 | 545.00 | 575.00 | OK | |
| r-oldrel-macos-arm64 | 1.6.0 | 9.00 | 221.00 | 230.00 | OK | |
| r-oldrel-macos-x86_64 | 1.6.0 | 26.00 | 614.00 | 640.00 | OK | |
| r-oldrel-windows-x86_64 | 1.6.0 | 41.00 | 729.00 | 770.00 | OK |
Version: 1.6.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [204s/239s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Loading required namespace: httptest2
boundary (singular) fit: see help('isSingular')
GAMLSS-RS iteration 1: Global Deviance = 365.2328
GAMLSS-RS iteration 2: Global Deviance = 365.1292
GAMLSS-RS iteration 3: Global Deviance = 365.1269
GAMLSS-RS iteration 4: Global Deviance = 365.1268
GAMLSS-RS iteration 1: Global Deviance = 5779.746
GAMLSS-RS iteration 2: Global Deviance = 5779.746
GAMLSS-RS iteration 1: Global Deviance = 703.1164
GAMLSS-RS iteration 2: Global Deviance = 703.1164
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Loading required namespace: GPArotation
Saving _problems/test-get_predicted-coxph-16.R
boundary (singular) fit: see help('isSingular')
iteration 1
boundary (singular) fit: see help('isSingular')
Saving _problems/test-is_converged_coxph-169.R
Saving _problems/test-is_converged_coxph-169.R
Saving _problems/test-is_converged_coxph-169.R
Saving _problems/test-is_converged_coxph-179.R
Saving _problems/test-is_converged_coxph-257.R
Saving _problems/test-is_converged_coxph-261.R
Saving _problems/test-is_converged_coxph-262.R
Saving _problems/test-is_converged_coxph-263.R
Saving _problems/test-is_converged_coxph-264.R
Saving _problems/test-is_converged_coxph-265.R
Saving _problems/test-is_converged_coxph-273.R
Saving _problems/test-is_converged_coxph-340.R
Saving _problems/test-is_converged_coxph-341.R
Convergence cannot be assessed. The score vector could not be computed
(subscript out of bounds). Returning `FALSE`.
Saving _problems/test-is_converged_coxph-342.R
Saving _problems/test-is_converged_coxph-348.R
Saving _problems/test-is_converged_coxph-443.R
Saving _problems/test-is_converged_coxph-443.R
Saving _problems/test-is_converged_coxph-443.R
Saving _problems/test-is_converged_coxph-487.R
mmrm() registered as emmeans extension
mmrm() registered as car::Anova extension
boundary (singular) fit: see help('isSingular')
Re-fitting to get Hessian
Re-fitting to get Hessian
Attaching package: 'rstpm2'
The following object is masked from 'package:survival':
colon
Saving _problems/test-rstpm2-16.R
Saving _problems/test-survey_coxph-21.R
[ FAIL 23 | WARN 224 | SKIP 127 | PASS 4099 ]
══ Skipped tests (127) ═════════════════════════════════════════════════════════
• On CRAN (116): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-betareg.R:197:5', 'test-bias_correction.R:1:1', 'test-blavaan.R:1:1',
'test-blmer.R:1:1', 'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_autocor.R:1:1', 'test-brms_gr_random_effects.R:1:1',
'test-brms_missing.R:1:1', 'test-brms_mm.R:1:1', 'test-brms_nonlinear.R:1:1',
'test-brms_von_mises.R:1:1', 'test-clean_names.R:109:3',
'test-clean_parameters.R:1:1', 'test-clmm.R:170:3', 'test-coxme.R:1:1',
'test-cpglmm.R:152:3', 'test-dbart.R:1:1', 'test-export_table.R:4:3',
'test-export_table.R:21:3', 'test-export_table.R:179:3',
'test-export_table.R:300:3', 'test-export_table.R:354:1',
'test-export_table.R:841:3', 'test-export_table.R:885:3',
'test-export_table.R:945:1', 'test-export_table.R:966:3',
'test-export_table.R:1055:3', 'test-export_table.R:1160:1',
'test-export_table.R:1230:1', 'test-export_table.R:1532:1',
'test-export_table.R:1543:1', 'test-export_table.R:1612:1',
'test-find_random.R:28:3', 'test-find_random.R:47:3',
'test-find_random_slopes.R:17:3', 'test-find_smooth.R:30:3',
'test-find_smooth.R:40:3', 'test-fixest.R:2:1', 'test-format_table.R:2:1',
'test-format_table_ci.R:76:3', 'test-gam.R:2:1', 'test-gamm4.R:2:1',
'test-get_data.R:507:1', 'test-get_datagrid.R:350:3',
'test-get_datagrid.R:1094:3', 'test-get_datagrid.R:1131:5',
'test-get_loglikelihood.R:143:3', 'test-get_loglikelihood.R:223:3',
'test-get_loglikelihood.R:320:3', 'test-get_predicted-newdata.R:1:1',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_simulated.R:151:3', 'test-get_varcov.R:43:3',
'test-get_varcov.R:57:3', 'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3',
'test-glmmTMB.R:803:3', 'test-glmmTMB.R:1142:3', 'test-is_converged.R:47:1',
'test-is_converged_cmdstanr.R:1:1', 'test-is_converged_stan.R:1:1',
'test-lavaan.R:1:1', 'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:45:3',
'test-lme.R:101:3', 'test-lme.R:123:3', 'test-lme.R:157:3',
'test-lme.R:317:3', 'test-lme.R:456:3', 'test-lme.R:489:3',
'test-lme.R:545:3', 'test-lme.R:580:3', 'test-lme.R:791:3',
'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1', 'test-mipo.R:1:1',
'test-mira.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-n_obs_brms.R:1:1',
'test-null_model.R:144:3', 'test-panelr-asym.R:165:3', 'test-panelr.R:301:3',
'test-phylolm.R:1:1', 'test-print_parameters.R:1:1',
'test-r2_nakagawa_bernoulli.R:1:1', 'test-r2_nakagawa_beta.R:1:1',
'test-r2_nakagawa_binomial.R:1:1', 'test-r2_nakagawa_gamma.R:1:1',
'test-r2_nakagawa_linear.R:1:1', 'test-r2_nakagawa_negbin.R:1:1',
'test-r2_nakagawa_negbin_zi.R:1:1', 'test-r2_nakagawa_ordered_beta.R:1:1',
'test-r2_nakagawa_poisson.R:1:1', 'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vcov_fpc.R:1:1', 'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-feis.R:3:1'
• These tests are no longer working as expected and need to be updated or code
needs to be fixed. (1): 'test-iv_robust.R:120:3'
• Works only interactively (1): 'test-get_simulated.R:422:3'
• getRversion() >= "4.6.0" is TRUE (1): 'test-get_residuals.R:4:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-get_predicted-coxph.R:16:3'): get_predicted, coxph, survival CIs match survfit() ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─base::as.data.frame(...) at test-get_predicted-coxph.R:16:3
2. ├─insight::get_predicted(m, data = nd, predict = "survival", ci = 0.95)
3. └─insight:::get_predicted.coxph(...)
4. └─insight (local) predict_function(x, data = my_args$data, se.fit = TRUE)
5. ├─stats::predict(x, newdata = data, type = my_args$type, ...)
6. └─survival:::predict.coxph(...)
7. ├─stats::model.matrix(object, data = mf)
8. └─survival:::model.matrix.coxph(object, data = mf)
9. └─stats::delete.response(object$terms)
10. └─stats (local) off(a$specials[[i]])
── Error ('test-get_predicted-coxph.R:30:5'): get_predicted, coxph, expectation returns SE without warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_silent(...) at test-get_predicted-coxph.R:29:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─base::as.data.frame(...) at test-get_predicted-coxph.R:30:5
10. ├─insight::get_predicted(...)
11. └─insight:::get_predicted.coxph(...)
12. └─insight (local) predict_function(x, data = my_args$data, se.fit = TRUE)
13. ├─stats::predict(x, newdata = data, type = my_args$type, ...)
14. └─survival:::predict.coxph(...)
15. └─stats::delete.response(Terms)
16. └─stats (local) off(a$specials[[i]])
── Failure ('test-is_converged_coxph.R:169:5'): is_converged.coxph, both checks give the results of survival ──
Expected `d$Diagnostic[1]` to be identical to "Iterations".
Differences:
`actual` is NULL
`expected` is a character vector ('Iterations')
Backtrace:
▆
1. └─insight (local) .cvx_expect_as_survival(f) at test-is_converged_coxph.R:169:5
2. └─testthat::expect_identical(d$Diagnostic[1], "Iterations") at test-is_converged_coxph.R:67:3
── Failure ('test-is_converged_coxph.R:169:5'): is_converged.coxph, both checks give the results of survival ──
Expected `d$Passed[1]` to be identical to `!ran_out`.
Differences:
`actual` is NULL
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─insight (local) .cvx_expect_as_survival(f) at test-is_converged_coxph.R:169:5
2. └─testthat::expect_identical(d$Passed[1], !ran_out) at test-is_converged_coxph.R:68:3
── Error ('test-is_converged_coxph.R:169:5'): is_converged.coxph, both checks give the results of survival ──
Error in `!d$Passed`: invalid argument type
Backtrace:
▆
1. └─insight (local) .cvx_expect_as_survival(f) at test-is_converged_coxph.R:169:5
2. ├─testthat::expect_identical(.cvx_flagged(result), warned) at test-is_converged_coxph.R:74:5
3. │ └─testthat::quasi_label(enquo(object), label)
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. └─insight (local) .cvx_flagged(result)
── Error ('test-is_converged_coxph.R:176:3'): is_converged.coxph, the probes cover the cases they name ──
Error in `!d$Passed`: invalid argument type
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-is_converged_coxph.R:176:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─insight (local) .cvx_flagged(is_converged(cvx_fits$reprex$fit, verbose = FALSE))
── Failure ('test-is_converged_coxph.R:257:3'): is_converged.coxph, diagnostics ──
Expected `diagnostics` to have names `c("Diagnostic", "Parameter", "Value", "Threshold", "Passed")`.
Differences:
`actual` is NULL
`expected` is a character vector ('Diagnostic', 'Parameter', 'Value', 'Threshold', 'Passed')
── Failure ('test-is_converged_coxph.R:258:3'): is_converged.coxph, diagnostics ──
Expected `diagnostics$Diagnostic` to be identical to `c("Iterations", rep("Infinite coefficient", 3))`.
Differences:
`actual` is NULL
`expected` is a character vector ('Iterations', 'Infinite coefficient', 'Infinite coefficient', 'Infinite coefficient')
── Failure ('test-is_converged_coxph.R:262:3'): is_converged.coxph, diagnostics ──
Expected `diagnostics$Parameter` to be identical to `c(NA, "age", "tmp1", "ph.ecog")`.
Differences:
`actual` is NULL
`expected` is a character vector (NA, 'age', 'tmp1', 'ph.ecog')
── Failure ('test-is_converged_coxph.R:263:3'): is_converged.coxph, diagnostics ──
Expected `diagnostics$Value[1]` to be identical to `as.numeric(cvx_fits$three_terms$fit$iter)`.
Differences:
`actual` is NULL
`expected` is a double vector (14)
── Failure ('test-is_converged_coxph.R:264:3'): is_converged.coxph, diagnostics ──
Expected `diagnostics$Threshold[1]` to be identical to 20.
Differences:
`actual` is NULL
`expected` is a double vector (20)
── Failure ('test-is_converged_coxph.R:265:3'): is_converged.coxph, diagnostics ──
Expected `diagnostics$Passed` to be identical to `c(TRUE, TRUE, FALSE, TRUE)`.
Differences:
`actual` is NULL
`expected` is a logical vector (TRUE, TRUE, FALSE, TRUE)
── Error ('test-is_converged_coxph.R:270:5'): is_converged.coxph, diagnostics ──
Error in `!diagnostics$Passed`: invalid argument type
Backtrace:
▆
1. └─testthat::expect_identical(...) at test-is_converged_coxph.R:270:5
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Failure ('test-is_converged_coxph.R:340:3'): is_converged.coxph, messages ───
Expected `messages` to match string "Infinite coefficient".
Actual text:
x | Convergence cannot be assessed. The score vector could not be computed
| (subscript out of bounds). Returning `FALSE`.
|
── Failure ('test-is_converged_coxph.R:341:3'): is_converged.coxph, messages ───
Expected `messages` to match string "tmp1".
Actual text:
x | Convergence cannot be assessed. The score vector could not be computed
| (subscript out of bounds). Returning `FALSE`.
|
── Failure ('test-is_converged_coxph.R:342:3'): is_converged.coxph, messages ───
Expected `is_converged(cvx_fits$reprex$fit)` to throw a message.
── Failure ('test-is_converged_coxph.R:348:3'): is_converged.coxph, messages ───
Expected `is_converged(cvx_fits$clean$fit)` to run silently.
Actual noise: messages.
── Failure ('test-is_converged_coxph.R:443:3'): is_converged.coxph, convergence cannot be assessed ──
Expected `d$Diagnostic[1]` to be identical to "Iterations".
Differences:
`actual` is NULL
`expected` is a character vector ('Iterations')
Backtrace:
▆
1. └─insight (local) .cvx_expect_as_survival(f_model) at test-is_converged_coxph.R:443:3
2. └─testthat::expect_identical(d$Diagnostic[1], "Iterations") at test-is_converged_coxph.R:67:3
── Failure ('test-is_converged_coxph.R:443:3'): is_converged.coxph, convergence cannot be assessed ──
Expected `d$Passed[1]` to be identical to `!ran_out`.
Differences:
`actual` is NULL
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─insight (local) .cvx_expect_as_survival(f_model) at test-is_converged_coxph.R:443:3
2. └─testthat::expect_identical(d$Passed[1], !ran_out) at test-is_converged_coxph.R:68:3
── Error ('test-is_converged_coxph.R:443:3'): is_converged.coxph, convergence cannot be assessed ──
Error in `!d$Passed`: invalid argument type
Backtrace:
▆
1. └─insight (local) .cvx_expect_as_survival(f_model) at test-is_converged_coxph.R:443:3
2. ├─testthat::expect_identical(.cvx_flagged(result), warned) at test-is_converged_coxph.R:74:5
3. │ └─testthat::quasi_label(enquo(object), label)
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. └─insight (local) .cvx_flagged(result)
── Error ('test-is_converged_coxph.R:487:3'): is_converged.coxph, other classes that inherit from coxph ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─survey::svycoxph(Surv(time, status) ~ age + sex, design = cvx_design) at test-is_converged_coxph.R:487:3
2. └─survey:::svycoxph.survey.design(...)
3. ├─stats::resid(g, "dfbeta", weighted = TRUE)
4. └─survival:::residuals.coxph(g, "dfbeta", weighted = TRUE)
5. └─survival:::coxph.getdata(object, y = TRUE, x = TRUE, stratax = TRUE)
6. ├─stats::model.matrix(fit, data = mf)
7. └─survival:::model.matrix.coxph(fit, data = mf)
8. └─stats::delete.response(object$terms)
9. └─stats (local) off(a$specials[[i]])
── Error ('test-rstpm2.R:12:1'): (code run outside of `test_that()`) ───────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─rstpm2::aft(...) at test-rstpm2.R:12:1
2. ├─base::pmax(-18, log(-log(S0hat(coxph.obj))))
3. └─rstpm2:::S0hat(coxph.obj)
4. ├─survival::survfit(obj, se.fit = FALSE)
5. └─survival:::survfit.coxph(obj, se.fit = FALSE)
6. └─survival:::model.matrix.coxph(object, data = mf)
7. └─stats::delete.response(object$terms)
8. └─stats (local) off(a$specials[[i]])
── Error ('test-survey_coxph.R:18:1'): (code run outside of `test_that()`) ─────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─survey::svycoxph(...) at test-survey_coxph.R:18:1
2. └─survey:::svycoxph.survey.design(...)
3. ├─stats::resid(g, "dfbeta", weighted = TRUE)
4. └─survival:::residuals.coxph(g, "dfbeta", weighted = TRUE)
5. └─survival:::coxph.getdata(object, y = TRUE, x = TRUE, stratax = TRUE)
6. ├─stats::model.matrix(fit, data = mf)
7. └─survival:::model.matrix.coxph(fit, data = mf)
8. └─stats::delete.response(object$terms)
9. └─stats (local) off(a$specials[[i]])
[ FAIL 23 | WARN 224 | SKIP 127 | PASS 4099 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.6.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.6.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [4m/12m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Loading required namespace: httptest2
boundary (singular) fit: see help('isSingular')
GAMLSS-RS iteration 1: Global Deviance = 365.2328
GAMLSS-RS iteration 2: Global Deviance = 365.1292
GAMLSS-RS iteration 3: Global Deviance = 365.1269
GAMLSS-RS iteration 4: Global Deviance = 365.1268
GAMLSS-RS iteration 1: Global Deviance = 5779.746
GAMLSS-RS iteration 2: Global Deviance = 5779.746
GAMLSS-RS iteration 1: Global Deviance = 703.1164
GAMLSS-RS iteration 2: Global Deviance = 703.1164
boundary (singular) fit: see help('isSingular')
boundary (singular) fit: see help('isSingular')
Loading required namespace: GPArotation
boundary (singular) fit: see help('isSingular')
iteration 1
Saving _problems/test-is_converged-16.R
Saving _problems/test-is_converged-21.R
boundary (singular) fit: see help('isSingular')
mmrm() registered as emmeans extension
mmrm() registered as car::Anova extension
boundary (singular) fit: see help('isSingular')
Saving _problems/test-panelr-8.R
Re-fitting to get Hessian
Re-fitting to get Hessian
Attaching package: 'rstpm2'
The following object is masked from 'package:survival':
colon
[ FAIL 3 | WARN 224 | SKIP 126 | PASS 4293 ]
══ Skipped tests (126) ═════════════════════════════════════════════════════════
• On CRAN (115): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-betareg.R:197:5', 'test-bias_correction.R:1:1', 'test-blavaan.R:1:1',
'test-blmer.R:1:1', 'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_autocor.R:1:1', 'test-brms_gr_random_effects.R:1:1',
'test-brms_missing.R:1:1', 'test-brms_mm.R:1:1', 'test-brms_nonlinear.R:1:1',
'test-brms_von_mises.R:1:1', 'test-clean_names.R:109:3',
'test-clean_parameters.R:1:1', 'test-clmm.R:170:3', 'test-coxme.R:1:1',
'test-cpglmm.R:152:3', 'test-dbart.R:1:1', 'test-export_table.R:4:3',
'test-export_table.R:21:3', 'test-export_table.R:179:3',
'test-export_table.R:300:3', 'test-export_table.R:354:1',
'test-export_table.R:841:3', 'test-export_table.R:885:3',
'test-export_table.R:945:1', 'test-export_table.R:966:3',
'test-export_table.R:1055:3', 'test-export_table.R:1160:1',
'test-export_table.R:1230:1', 'test-export_table.R:1532:1',
'test-export_table.R:1543:1', 'test-export_table.R:1612:1',
'test-find_random.R:28:3', 'test-find_random.R:47:3',
'test-find_random_slopes.R:17:3', 'test-find_smooth.R:30:3',
'test-find_smooth.R:40:3', 'test-fixest.R:2:1', 'test-format_table.R:2:1',
'test-format_table_ci.R:76:3', 'test-gam.R:2:1', 'test-gamm4.R:2:1',
'test-get_data.R:507:1', 'test-get_datagrid.R:350:3',
'test-get_datagrid.R:1094:3', 'test-get_datagrid.R:1131:5',
'test-get_loglikelihood.R:143:3', 'test-get_loglikelihood.R:223:3',
'test-get_loglikelihood.R:320:3', 'test-get_predicted-newdata.R:1:1',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_simulated.R:151:3', 'test-get_varcov.R:43:3',
'test-get_varcov.R:57:3', 'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3',
'test-glmmTMB.R:803:3', 'test-glmmTMB.R:1142:3', 'test-is_converged.R:47:1',
'test-is_converged_cmdstanr.R:1:1', 'test-is_converged_stan.R:1:1',
'test-lavaan.R:1:1', 'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:45:3',
'test-lme.R:101:3', 'test-lme.R:123:3', 'test-lme.R:157:3',
'test-lme.R:317:3', 'test-lme.R:456:3', 'test-lme.R:489:3',
'test-lme.R:545:3', 'test-lme.R:580:3', 'test-lme.R:791:3',
'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1', 'test-mipo.R:1:1',
'test-mira.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-n_obs_brms.R:1:1',
'test-null_model.R:144:3', 'test-panelr-asym.R:165:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vcov_fpc.R:1:1', 'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-feis.R:3:1'
• These tests are no longer working as expected and need to be updated or code
needs to be fixed. (1): 'test-iv_robust.R:120:3'
• Works only interactively (1): 'test-get_simulated.R:422:3'
• getRversion() >= "4.6.0" is TRUE (1): 'test-get_residuals.R:4:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-is_converged.R:16:3'): is_converged ──────────────────────────
Expected `is_converged(model)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-is_converged.R:17:3'): is_converged ──────────────────────────
Expected `is_converged(model)` to equal `structure(TRUE, gradient = NA_real_)`.
Differences:
`attr(actual, 'gradient')`: 0.0
`attr(expected, 'gradient')`: NA
`actual`: FALSE
`expected`: TRUE
── Error ('test-panelr.R:5:1'): (code run outside of `test_that()`) ────────────
Error in `model.frame.default(data = data, weights = weights, offset = offset, drop.unused.levels = TRUE, formula = lwage ~ `imean(lag(union))` + `imean(wks)` + `lag(union)` + wks + blk + fem + `lag(union):blk` + (1 + id))`: invalid type (closure) for variable '(weights)'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-panelr.R:5:1
2. │ └─base::withCallingHandlers(...)
3. └─panelr::wbm(...)
4. ├─lme4::lmer(...)
5. │ └─base::eval(mc, parent.frame(1L))
6. │ └─base::eval(mc, parent.frame(1L))
7. ├─lme4::lFormula(...)
8. │ └─lme4:::mkFormula(...)
9. │ └─base::eval(mf, parent_env)
10. │ └─base::eval(mf, parent_env)
11. ├─stats::model.frame(...)
12. └─stats::model.frame.default(...)
[ FAIL 3 | WARN 224 | SKIP 126 | PASS 4293 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc