Last updated on 2026-10-24 09:50:51 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.22-7 | 17.51 | 45.15 | 62.66 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.22-7 | 10.70 | 34.08 | 44.78 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.22-7 | 10.00 | 29.51 | 39.51 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.22-7 | 10.00 | 29.34 | 39.34 | OK | |
| r-devel-windows-x86_64 | 1.22-7 | 26.00 | 139.00 | 165.00 | OK | |
| r-patched-linux-x86_64 | 1.22-7 | 14.96 | 37.71 | 52.67 | OK | |
| r-release-linux-x86_64 | 1.22-7 | 13.93 | 37.27 | 51.20 | OK | |
| r-release-macos-arm64 | 1.22-7 | 5.00 | 11.00 | 16.00 | OK | |
| r-release-macos-x86_64 | 1.22-7 | 13.00 | 38.00 | 51.00 | OK | |
| r-release-windows-x86_64 | 1.22-7 | 24.00 | 63.00 | 87.00 | OK | |
| r-oldrel-macos-arm64 | 1.22-7 | 5.00 | 12.00 | 17.00 | OK | |
| r-oldrel-macos-x86_64 | 1.22-7 | 14.00 | 94.00 | 108.00 | OK | |
| r-oldrel-windows-x86_64 | 1.22-7 | 28.00 | 70.00 | 98.00 | OK |
Version: 1.22-7
Check: examples
Result: ERROR
Running examples in ‘gam-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gam
> ### Title: Fitting Generalized Additive Models
> ### Aliases: gam gam.fit
> ### Keywords: models nonparametric regression smooth
>
> ### ** Examples
>
>
> data(kyphosis)
> gam(Kyphosis ~ s(Age,4) + Number, family = binomial, data=kyphosis,
+ trace=TRUE)
GAM s.wam loop 1: deviance = 66.42095
GAM s.wam loop 2: deviance = 63.77252
GAM s.wam loop 3: deviance = 63.25199
GAM s.wam loop 4: deviance = 63.13399
GAM s.wam loop 5: deviance = 63.11016
GAM s.wam loop 6: deviance = 63.10748
GAM s.wam loop 7: deviance = 63.10727
GAM s.wam loop 8: deviance = 63.10725
GAM s.wam loop 9: deviance = 63.10725
Call:
gam(formula = Kyphosis ~ s(Age, 4) + Number, family = binomial,
data = kyphosis, trace = TRUE)
Degrees of Freedom: 80 total; 75.00002 Residual
Residual Deviance: 63.10725
> data(airquality)
> gam(Ozone^(1/3) ~ lo(Solar.R) + lo(Wind, Temp), data=airquality, na=na.gam.replace)
Warning in na.action(mf) :
37 observations omitted due to missing values in the response
Call:
gam(formula = Ozone^(1/3) ~ lo(Solar.R) + lo(Wind, Temp), data = airquality,
na.action = na.gam.replace)
Degrees of Freedom: 115 total; 102.6679 Residual
Residual Deviance: 20.05229
> gam(Kyphosis ~ poly(Age,2) + s(Start), data=kyphosis, family=binomial, subset=Number>2)
Call:
gam(formula = Kyphosis ~ poly(Age, 2) + s(Start), family = binomial,
data = kyphosis, subset = Number > 2)
Degrees of Freedom: 68 total; 61.99976 Residual
Residual Deviance: 44.5635
> data(gam.data)
> Gam.object <- gam(y ~ s(x,6) + z,data=gam.data)
> summary(Gam.object)
Call: gam(formula = y ~ s(x, 6) + z, data = gam.data)
Deviance Residuals:
Min 1Q Median 3Q Max
-0.59177 -0.18050 0.01291 0.23941 0.51412
(Dispersion Parameter for gaussian family taken to be 0.0823)
Null Deviance: 57.7496 on 99 degrees of freedom
Residual Deviance: 7.5745 on 92.0003 degrees of freedom
AIC: 43.7495
Number of Local Scoring Iterations: NA
Anova for Parametric Effects
Df Sum Sq Mean Sq F value Pr(>F)
s(x, 6) 1 38.210 38.210 464.0987 <2e-16 ***
z 1 0.084 0.084 1.0247 0.3141
Residuals 92 7.575 0.082
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Anova for Nonparametric Effects
Npar Df Npar F Pr(F)
(Intercept)
s(x, 6) 5 28.697 < 2.2e-16 ***
z
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
> plot(Gam.object,se=TRUE)
> data(gam.newdata)
> predict(Gam.object,type="terms",newdata=gam.newdata)
Error in a$specials[[i]] : subscript out of bounds
Calls: predict ... predict.glm -> predict.lm -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.22-7
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gam)
Loading required package: splines
Loading required package: foreach
Loaded gam 1.22-7
>
> test_check("gam")
Start: y ~ s(x, 6) + z; AIC= 43.7495
Step:1 y ~ s(x, 6) ; AIC= 42.6681
Saving _problems/test_example-16.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_example.R:16:1'): (code run outside of `test_that()`) ──────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─stats::predict(Gam.object, type = "terms", newdata = gam.newdata) at test_example.R:16:1
2. └─gam::predict.Gam(Gam.object, type = "terms", newdata = gam.newdata)
3. └─gam::newdata.predict.Gam(...)
4. └─stats::predict.glm(...)
5. └─stats::predict.lm(...)
6. └─stats::delete.response(tt)
7. └─stats (local) off(a$specials[[i]])
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc