Last updated on 2026-10-24 03:56:06 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.8 | 6.51 | 186.07 | 192.58 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.8 | 4.19 | 116.14 | 120.33 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.8 | 117.62 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.8 | 121.98 | OK | |||
| r-devel-windows-x86_64 | 1.0.8 | 11.00 | 193.00 | 204.00 | OK | |
| r-patched-linux-x86_64 | 1.0.8 | 7.18 | 173.54 | 180.72 | OK | |
| r-release-linux-x86_64 | 1.0.8 | 6.14 | 173.36 | 179.50 | OK | |
| r-release-macos-arm64 | 1.0.8 | 1.00 | 47.00 | 48.00 | OK | |
| r-release-macos-x86_64 | 1.0.8 | 4.00 | 167.00 | 171.00 | OK | |
| r-release-windows-x86_64 | 1.0.8 | 9.00 | 183.00 | 192.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.8 | 1.00 | 51.00 | 52.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.8 | 4.00 | 190.00 | 194.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.8 | 11.00 | 234.00 | 245.00 | OK |
Version: 1.0.8
Check: examples
Result: ERROR
Running examples in ‘dtComb-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotComb
> ### Title: Plot the combination scores using the training model
> ### Aliases: plotComb
>
> ### ** Examples
>
>
> # call data
> data(laparotomy)
>
> # define the function parameters
> markers <- laparotomy[, -1]
> status <- factor(laparotomy$group, levels = c("not_needed", "needed"))
> event <- "needed"
>
> score1 <- linComb(
+ markers = markers, status = status, event = event,
+ method = "scoring", resample = "none",
+ standardize = "none", direction = "<", cutoff.method = "Youden"
+ )
>
> plotComb(score1, status)
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
ℹ The deprecated feature was likely used in the dtComb package.
Please report the issue to the authors.
$plotDensity
$plotScatter
$plotSensSpec
$all
>
> score2 <- nonlinComb(
+ markers = markers, status = status, event = event,
+ method = "nsgam", resample = "cv", include.interact = FALSE, direction = "<",
+ standardize = "zScore", cutoff.method = "Youden"
+ )
Error in a$specials[[i]] : subscript out of bounds
Calls: nonlinComb -> suppressMessages -> withCallingHandlers
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
linComb 4.395 0.311 6.716
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.8
Check: tests
Result: ERROR
Running ‘testthat.R’ [48s/65s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dtComb)
> # require(APtools)
> # # library(usethis)
>
> test_check("dtComb")
Saving _problems/test-nonlinComb-114.R
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 249 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-nonlinComb.R:106:3'): (code run outside of `test_that()`) ──────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─dtComb::nonlinComb(...) at test-nonlinComb.R:106:3
2. ├─base::suppressMessages(...)
3. │ └─base::withCallingHandlers(...)
4. ├─base::suppressWarnings(...)
5. │ └─base::withCallingHandlers(...)
6. ├─stats::predict(model, newdata = data, type = "response")
7. └─gam::predict.Gam(model, newdata = data, type = "response")
8. └─gam::newdata.predict.Gam(...)
9. └─stats::predict.glm(...)
10. └─stats::predict.lm(...)
11. └─stats::delete.response(tt)
12. └─stats (local) off(a$specials[[i]])
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 249 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc