Last updated on 2026-09-20 14:49:15 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.12 | 2.56 | 36.47 | 39.03 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.12 | 1.91 | 27.39 | 29.30 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.1.12 | 24.83 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.12 | 24.65 | OK | |||
| r-devel-windows-x86_64 | 2.1.12 | 4.00 | 67.00 | 71.00 | OK | |
| r-patched-linux-x86_64 | 2.1.12 | 2.94 | 33.36 | 36.30 | OK | |
| r-release-linux-x86_64 | 2.1.12 | 2.89 | 32.02 | 34.91 | ERROR | |
| r-release-macos-arm64 | 2.1.12 | 1.00 | 38.00 | 39.00 | OK | |
| r-release-macos-x86_64 | 2.1.12 | 2.00 | 61.00 | 63.00 | OK | |
| r-release-windows-x86_64 | 2.1.12 | 5.00 | 70.00 | 75.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.1.12 | OK | ||||
| r-oldrel-macos-x86_64 | 2.1.12 | 2.00 | 57.00 | 59.00 | OK | |
| r-oldrel-windows-x86_64 | 2.1.12 | 8.00 | 70.00 | 78.00 | OK |
Version: 2.1.12
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cthist)
>
> test_check("cthist")
NCT ID caused a warning: NCT00942747
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747?history=true': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_dates-6.R
NCT ID caused a warning: NCT02329873
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02329873?history=true': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_download-8.R
Version caused a warning: NCT05827978 version 3
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT05827978/history/3': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_locations-12.R
Version caused a warning: NCT00942747 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version-6.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_central_contacts-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_criteria-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_enrol-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_enroltype-12.R
NCT ID caused a warning: NCT00942747
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747?history=true': HTTP status was '403 Forbidden'
Error downloading version: NCT00942747 version -1
Here's the original error message:
Error in dates$version_number: $ operator is invalid for atomic vectors
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_lead_sponsor-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_max_age-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_min_age-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_om_data-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_orgstudyid-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_ostatus-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_overall_contacts-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_pcdate-12.R
Version caused a warning: NCT00098137 version 0
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00098137/history/0': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_pcdate_none-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_pcdate_precision-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_pcdate_type-12.R
Version caused a warning: NCT04315480 version 2
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT04315480/history/2': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_references-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_responsible_party-12.R
Version caused a warning: NCT05168917 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT05168917/history/1': HTTP status was '403 Forbidden'
Version caused a warning: NCT05168917 version 3
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT05168917/history/3': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_results_posted-14.R
Version caused a warning: NCT00942747 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_secondaryids-16.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_sex-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_startdate-12.R
Version caused a warning: NCT00003636 version 0
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00003636/history/0': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_startdate_none-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_startdate_precision-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_volunteers-12.R
NCT ID caused a warning: NCT02586649
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02586649?history=true': HTTP status was '403 Forbidden'
Here's the original error message:
Error in UseMethod("pull"): no applicable method for 'pull' applied to an object of class "character"
Saving _problems/test-extract_publications-7.R
NCT ID caused a warning: NCT04338971
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT04338971?history=true': HTTP status was '403 Forbidden'
Saving _problems/test-overall_status_lengths-4.R
[ FAIL 30 | WARN 0 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-clinicaltrials_gov_dates.R:3:5'): ClinicalTrials.gov version dates download correctly ──
Error in `result$version_date`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(...) at test-clinicaltrials_gov_dates.R:3:5
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_download.R:6:5'): ClinicalTrials.gov history entries mass-download correctly ──
Error in `UseMethod("pull")`: no applicable method for 'pull' applied to an object of class "character"
Backtrace:
▆
1. ├─cthist::clinicaltrials_gov_download(...) at test-clinicaltrials_gov_download.R:6:5
2. │ └─clinicaltrials_gov_dates(nctid, FALSE) %>% ...
3. └─dplyr::pull(., "version_date")
── Error ('test-clinicaltrials_gov_locations.R:9:9'): ClinicalTrials.gov location data downloads correctly ──
Error in `version$locations`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_locations.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$locations)
── Failure ('test-clinicaltrials_gov_version.R:3:5'): ClinicalTrials.gov version downloads correctly ──
Expected `length(result) == 25 || result == "Error"` to equal TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test-clinicaltrials_gov_version_central_contacts.R:9:9'): ClinicalTrials.gov contacts downloads correctly ──
Error in `version$central_contacts`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_central_contacts.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$central_contacts)
── Error ('test-clinicaltrials_gov_version_criteria.R:9:9'): ClinicalTrials.gov criteria downloads correctly ──
Error in `version$criteria`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$criteria, "<p>Inclusion Criteria (MCI patients):</p><ul><li>right handedness</li><li><p>amnestic and amnestic plus MCI with:</p><ol><li>subjective memory impairment;</li><li>objective memory difficulties, at least 1 SD below gender, age and education adjusted standard values;</li><li>relatively normal performance in other cognitive domains;</li><li>no constraints in activities of daily livings</li><li>age: 50-90 years</li></ol></li></ul><p>Exclusion Criteria:</p><ul><li>severe internal or psychiatric disease</li><li>epilepsy</li><li>other severe neurological diseases, e.g.\nprevious major stroke or brain tumor</li><li>DMS-IV manifest dementia</li><li>contraindication for MRT (claustrophobia, metallic implants, tattoos)</li></ul>") at test-clinicaltrials_gov_version_criteria.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_enrol.R:9:9'): ClinicalTrials.gov enrolment downloads correctly ──
Error in `version$enrol`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$enrol, 22) at test-clinicaltrials_gov_version_enrol.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_enroltype.R:9:9'): ClinicalTrials.gov enrolment downloads correctly ──
Error in `version$enroltype`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$enroltype, "ESTIMATED") at test-clinicaltrials_gov_version_enroltype.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_lead_sponsor.R:9:9'): ClinicalTrials.gov contacts downloads correctly ──
Error in `version$lead_sponsor`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_lead_sponsor.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$lead_sponsor)
── Error ('test-clinicaltrials_gov_version_max_age.R:9:9'): ClinicalTrials.gov maximum age downloads correctly ──
Error in `version$max_age`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$max_age, "90 Years") at test-clinicaltrials_gov_version_max_age.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_min_age.R:9:9'): ClinicalTrials.gov minimum age downloads correctly ──
Error in `version$min_age`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$min_age, "50 Years") at test-clinicaltrials_gov_version_min_age.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_om_data.R:9:9'): ClinicalTrials.gov outcome measures downloads correctly ──
Error in `version$outcomes`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_om_data.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$outcomes)
── Error ('test-clinicaltrials_gov_version_orgstudyid.R:9:9'): ClinicalTrials.gov org study ID downloads correctly ──
Error in `version$orgstudyid`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$orgstudyid, "LOCATO-MCI-tDCS") at test-clinicaltrials_gov_version_orgstudyid.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_ostatus.R:9:9'): ClinicalTrials.gov overall status downloads correctly ──
Error in `version$ostatus`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$ostatus, "RECRUITING") at test-clinicaltrials_gov_version_ostatus.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_overall_contacts.R:9:9'): ClinicalTrials.gov contacts downloads correctly ──
Error in `version$overall_contacts`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_overall_contacts.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$overall_contacts)
── Error ('test-clinicaltrials_gov_version_pcdate.R:9:9'): ClinicalTrials.gov primary completion date downloads correctly ──
Error in `version$pcdate`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$pcdate, "2015-08-01") at test-clinicaltrials_gov_version_pcdate.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_pcdate_none.R:9:9'): ClinicalTrials.gov empty primary completion date ──
Error in `version$pcdate`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(is.na(version$pcdate), TRUE) at test-clinicaltrials_gov_version_pcdate_none.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_pcdate_precision.R:9:9'): ClinicalTrials.gov primary completion date precision downloads correctly ──
Error in `version$pcdate_precision`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$pcdate_precision, "month") at test-clinicaltrials_gov_version_pcdate_precision.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_pcdate_type.R:9:9'): ClinicalTrials.gov primary completion date type downloads correctly ──
Error in `version$pcdate_type`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$pcdate_type, "ESTIMATED") at test-clinicaltrials_gov_version_pcdate_type.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_references.R:9:9'): ClinicalTrials.gov references downloads correctly ──
Error in `version$references`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_references.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$references)
── Error ('test-clinicaltrials_gov_version_responsible_party.R:9:9'): ClinicalTrials.gov contacts downloads correctly ──
Error in `version$responsible_party`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_responsible_party.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$responsible_party)
── Error ('test-clinicaltrials_gov_version_results_posted.R:10:9'): ClinicalTrials.gov results posted downloads correctly ──
Error in `version_false$results_posted`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(...) at test-clinicaltrials_gov_version_results_posted.R:10:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_secondaryids.R:9:9'): ClinicalTrials.gov org study ID downloads correctly ──
Error in `version$secondaryids`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_secondaryids.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─tibble::tibble(jsonlite::fromJSON(version$secondaryids))
5. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
6. │ └─rlang::eval_tidy(xs[[j]], mask)
7. └─jsonlite::fromJSON(version$secondaryids)
── Error ('test-clinicaltrials_gov_version_sex.R:9:9'): ClinicalTrials.gov sex downloads correctly ──
Error in `version$sex`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$sex, "ALL") at test-clinicaltrials_gov_version_sex.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_startdate.R:9:9'): ClinicalTrials.gov start date downloads correctly ──
Error in `version$startdate`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$startdate, "2014-03-01") at test-clinicaltrials_gov_version_startdate.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_startdate_none.R:9:9'): ClinicalTrials.gov start date downloads correctly ──
Error in `version$startdate`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(is.na(version$startdate), TRUE) at test-clinicaltrials_gov_version_startdate_none.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_startdate_precision.R:9:9'): ClinicalTrials.gov start date precision downloads correctly ──
Error in `version$startdate_precision`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$startdate_precision, "month") at test-clinicaltrials_gov_version_startdate_precision.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_volunteers.R:9:9'): ClinicalTrials.gov 'accepts healthy volunteers' downloads correctly ──
Error in `version$accepts_healthy_volunteers`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$accepts_healthy_volunteers, FALSE) at test-clinicaltrials_gov_version_volunteers.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-extract_publications.R:4:5'): Publications extracted correctly ──
Error in `pmid$pmid`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(pmid$pmid[1], "10569435") at test-extract_publications.R:4:5
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-overall_status_lengths.R:2:3'): Overall status lengths parse correctly ──
Error in `UseMethod("pull")`: no applicable method for 'pull' applied to an object of class "character"
Backtrace:
▆
1. ├─cthist::clinicaltrials_gov_download("NCT04338971", quiet = TRUE) at test-overall_status_lengths.R:2:3
2. │ └─clinicaltrials_gov_dates(nctid, FALSE) %>% ...
3. └─dplyr::pull(., "version_date")
[ FAIL 30 | WARN 0 | SKIP 0 | PASS 1 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1.12
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cthist)
>
> test_check("cthist")
NCT ID caused a warning: NCT00942747
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747?history=true': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_dates-6.R
NCT ID caused a warning: NCT02329873
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02329873?history=true': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_download-8.R
Version caused a warning: NCT05827978 version 3
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT05827978/history/3': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_locations-12.R
Version caused a warning: NCT00942747 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version-6.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_central_contacts-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_criteria-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_enrol-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_enroltype-12.R
NCT ID caused a warning: NCT00942747
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747?history=true': HTTP status was '403 Forbidden'
Error downloading version: NCT00942747 version -1
Here's the original error message:
Error in dates$version_number: $ operator is invalid for atomic vectors
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_lead_sponsor-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_max_age-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_min_age-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_om_data-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_orgstudyid-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_ostatus-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_overall_contacts-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_pcdate-12.R
Version caused a warning: NCT00098137 version 0
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00098137/history/0': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_pcdate_none-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_pcdate_precision-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_pcdate_type-12.R
Version caused a warning: NCT04315480 version 2
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT04315480/history/2': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_references-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_responsible_party-12.R
Version caused a warning: NCT05168917 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT05168917/history/1': HTTP status was '403 Forbidden'
Version caused a warning: NCT05168917 version 3
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT05168917/history/3': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_results_posted-14.R
Version caused a warning: NCT00942747 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00942747/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_secondaryids-16.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_sex-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_startdate-12.R
Version caused a warning: NCT00003636 version 0
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT00003636/history/0': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_startdate_none-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_startdate_precision-12.R
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '403 Forbidden'
Saving _problems/test-clinicaltrials_gov_version_volunteers-12.R
NCT ID caused a warning: NCT02586649
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02586649?history=true': HTTP status was '403 Forbidden'
Here's the original error message:
Error in UseMethod("pull"): no applicable method for 'pull' applied to an object of class "character"
Saving _problems/test-extract_publications-7.R
NCT ID caused a warning: NCT04338971
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT04338971?history=true': HTTP status was '403 Forbidden'
Saving _problems/test-overall_status_lengths-4.R
[ FAIL 30 | WARN 0 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-clinicaltrials_gov_dates.R:3:5'): ClinicalTrials.gov version dates download correctly ──
Error in `result$version_date`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(...) at test-clinicaltrials_gov_dates.R:3:5
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_download.R:6:5'): ClinicalTrials.gov history entries mass-download correctly ──
Error in `UseMethod("pull")`: no applicable method for 'pull' applied to an object of class "character"
Backtrace:
▆
1. ├─cthist::clinicaltrials_gov_download(...) at test-clinicaltrials_gov_download.R:6:5
2. │ └─clinicaltrials_gov_dates(nctid, FALSE) %>% ...
3. └─dplyr::pull(., "version_date")
── Error ('test-clinicaltrials_gov_locations.R:9:9'): ClinicalTrials.gov location data downloads correctly ──
Error in `version$locations`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_locations.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$locations)
── Failure ('test-clinicaltrials_gov_version.R:3:5'): ClinicalTrials.gov version downloads correctly ──
Expected `length(result) == 25 || result == "Error"` to equal TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test-clinicaltrials_gov_version_central_contacts.R:9:9'): ClinicalTrials.gov contacts downloads correctly ──
Error in `version$central_contacts`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_central_contacts.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$central_contacts)
── Error ('test-clinicaltrials_gov_version_criteria.R:9:9'): ClinicalTrials.gov criteria downloads correctly ──
Error in `version$criteria`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$criteria, "<p>Inclusion Criteria (MCI patients):</p><ul><li>right handedness</li><li><p>amnestic and amnestic plus MCI with:</p><ol><li>subjective memory impairment;</li><li>objective memory difficulties, at least 1 SD below gender, age and education adjusted standard values;</li><li>relatively normal performance in other cognitive domains;</li><li>no constraints in activities of daily livings</li><li>age: 50-90 years</li></ol></li></ul><p>Exclusion Criteria:</p><ul><li>severe internal or psychiatric disease</li><li>epilepsy</li><li>other severe neurological diseases, e.g.\nprevious major stroke or brain tumor</li><li>DMS-IV manifest dementia</li><li>contraindication for MRT (claustrophobia, metallic implants, tattoos)</li></ul>") at test-clinicaltrials_gov_version_criteria.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_enrol.R:9:9'): ClinicalTrials.gov enrolment downloads correctly ──
Error in `version$enrol`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$enrol, 22) at test-clinicaltrials_gov_version_enrol.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_enroltype.R:9:9'): ClinicalTrials.gov enrolment downloads correctly ──
Error in `version$enroltype`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$enroltype, "ESTIMATED") at test-clinicaltrials_gov_version_enroltype.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_lead_sponsor.R:9:9'): ClinicalTrials.gov contacts downloads correctly ──
Error in `version$lead_sponsor`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_lead_sponsor.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$lead_sponsor)
── Error ('test-clinicaltrials_gov_version_max_age.R:9:9'): ClinicalTrials.gov maximum age downloads correctly ──
Error in `version$max_age`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$max_age, "90 Years") at test-clinicaltrials_gov_version_max_age.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_min_age.R:9:9'): ClinicalTrials.gov minimum age downloads correctly ──
Error in `version$min_age`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$min_age, "50 Years") at test-clinicaltrials_gov_version_min_age.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_om_data.R:9:9'): ClinicalTrials.gov outcome measures downloads correctly ──
Error in `version$outcomes`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_om_data.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$outcomes)
── Error ('test-clinicaltrials_gov_version_orgstudyid.R:9:9'): ClinicalTrials.gov org study ID downloads correctly ──
Error in `version$orgstudyid`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$orgstudyid, "LOCATO-MCI-tDCS") at test-clinicaltrials_gov_version_orgstudyid.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_ostatus.R:9:9'): ClinicalTrials.gov overall status downloads correctly ──
Error in `version$ostatus`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$ostatus, "RECRUITING") at test-clinicaltrials_gov_version_ostatus.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_overall_contacts.R:9:9'): ClinicalTrials.gov contacts downloads correctly ──
Error in `version$overall_contacts`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_overall_contacts.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$overall_contacts)
── Error ('test-clinicaltrials_gov_version_pcdate.R:9:9'): ClinicalTrials.gov primary completion date downloads correctly ──
Error in `version$pcdate`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$pcdate, "2015-08-01") at test-clinicaltrials_gov_version_pcdate.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_pcdate_none.R:9:9'): ClinicalTrials.gov empty primary completion date ──
Error in `version$pcdate`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(is.na(version$pcdate), TRUE) at test-clinicaltrials_gov_version_pcdate_none.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_pcdate_precision.R:9:9'): ClinicalTrials.gov primary completion date precision downloads correctly ──
Error in `version$pcdate_precision`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$pcdate_precision, "month") at test-clinicaltrials_gov_version_pcdate_precision.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_pcdate_type.R:9:9'): ClinicalTrials.gov primary completion date type downloads correctly ──
Error in `version$pcdate_type`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$pcdate_type, "ESTIMATED") at test-clinicaltrials_gov_version_pcdate_type.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_references.R:9:9'): ClinicalTrials.gov references downloads correctly ──
Error in `version$references`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_references.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$references)
── Error ('test-clinicaltrials_gov_version_responsible_party.R:9:9'): ClinicalTrials.gov contacts downloads correctly ──
Error in `version$responsible_party`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_responsible_party.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─jsonlite::fromJSON(version$responsible_party)
── Error ('test-clinicaltrials_gov_version_results_posted.R:10:9'): ClinicalTrials.gov results posted downloads correctly ──
Error in `version_false$results_posted`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(...) at test-clinicaltrials_gov_version_results_posted.R:10:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_secondaryids.R:9:9'): ClinicalTrials.gov org study ID downloads correctly ──
Error in `version$secondaryids`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-clinicaltrials_gov_version_secondaryids.R:9:9
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─tibble::tibble(jsonlite::fromJSON(version$secondaryids))
5. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
6. │ └─rlang::eval_tidy(xs[[j]], mask)
7. └─jsonlite::fromJSON(version$secondaryids)
── Error ('test-clinicaltrials_gov_version_sex.R:9:9'): ClinicalTrials.gov sex downloads correctly ──
Error in `version$sex`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$sex, "ALL") at test-clinicaltrials_gov_version_sex.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_startdate.R:9:9'): ClinicalTrials.gov start date downloads correctly ──
Error in `version$startdate`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$startdate, "2014-03-01") at test-clinicaltrials_gov_version_startdate.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_startdate_none.R:9:9'): ClinicalTrials.gov start date downloads correctly ──
Error in `version$startdate`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(is.na(version$startdate), TRUE) at test-clinicaltrials_gov_version_startdate_none.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_startdate_precision.R:9:9'): ClinicalTrials.gov start date precision downloads correctly ──
Error in `version$startdate_precision`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$startdate_precision, "month") at test-clinicaltrials_gov_version_startdate_precision.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-clinicaltrials_gov_version_volunteers.R:9:9'): ClinicalTrials.gov 'accepts healthy volunteers' downloads correctly ──
Error in `version$accepts_healthy_volunteers`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$accepts_healthy_volunteers, FALSE) at test-clinicaltrials_gov_version_volunteers.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-extract_publications.R:4:5'): Publications extracted correctly ──
Error in `pmid$pmid`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(pmid$pmid[1], "10569435") at test-extract_publications.R:4:5
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-overall_status_lengths.R:2:3'): Overall status lengths parse correctly ──
Error in `UseMethod("pull")`: no applicable method for 'pull' applied to an object of class "character"
Backtrace:
▆
1. ├─cthist::clinicaltrials_gov_download("NCT04338971", quiet = TRUE) at test-overall_status_lengths.R:2:3
2. │ └─clinicaltrials_gov_dates(nctid, FALSE) %>% ...
3. └─dplyr::pull(., "version_date")
[ FAIL 30 | WARN 0 | SKIP 0 | PASS 1 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.1.12
Check: tests
Result: ERROR
Running 'testthat.R' [24s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(cthist)
>
> test_check("cthist")
Version caused a warning: NCT02110043 version 1
Here's the original warning message:
simpleWarning in open.connection(con, "rb"): cannot open URL 'https://clinicaltrials.gov/api/int/studies/NCT02110043/history/1': HTTP status was '502 Bad Gateway'
Saving _problems/test-clinicaltrials_gov_version_max_age-12.R
NCT02586649 - 4 of 4
2026-09-09 15:20:58.906127 NCT02586649 processed (4 versions, 100%)
Rows: 1 Columns: 29
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (20): nctid, overall_status, study_start_date_precision, primary_comple...
dbl (3): version_number, total_versions, enrolment
lgl (3): accepts_healthy_volunteers, whystopped, results_posted
date (3): version_date, study_start_date, primary_completion_date
i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Rows: 5 Columns: 29
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (20): nctid, overall_status, study_start_date_precision, primary_comple...
dbl (3): version_number, total_versions, enrolment
lgl (3): accepts_healthy_volunteers, whystopped, results_posted
date (3): version_date, study_start_date, primary_completion_date
i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 30 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-clinicaltrials_gov_version_max_age.R:9:9'): ClinicalTrials.gov maximum age downloads correctly ──
Error in `version$max_age`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─testthat::expect_equal(version$max_age, "90 Years") at test-clinicaltrials_gov_version_max_age.R:9:9
2. └─testthat::quasi_label(enquo(object), label)
3. └─rlang::eval_bare(expr, quo_get_env(quo))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 30 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64