Last updated on 2026-10-24 15:51:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.1 | 5.75 | 67.63 | 73.38 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.1 | 4.54 | 47.98 | 52.52 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.1 | 50.37 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.1 | 5.00 | 53.27 | 58.27 | OK | |
| r-devel-windows-x86_64 | 0.2.1 | 8.00 | 83.00 | 91.00 | OK | |
| r-patched-linux-x86_64 | 0.2.1 | 5.48 | 60.95 | 66.43 | OK | |
| r-release-linux-x86_64 | 0.2.1 | 6.07 | 61.67 | 67.74 | OK | |
| r-release-macos-arm64 | 0.2.1 | 2.00 | 23.00 | 25.00 | OK | |
| r-release-macos-x86_64 | 0.2.1 | 5.00 | 78.00 | 83.00 | OK | |
| r-release-windows-x86_64 | 0.2.1 | 7.00 | 74.00 | 81.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.1 | 2.00 | 26.00 | 28.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.1 | 5.00 | 90.00 | 95.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.1 | 9.00 | 90.00 | 99.00 | OK |
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in ‘cox.rvph-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cox.rvph
> ### Title: Remedy for Violations of the Proportional Hazards Assumption in
> ### Cox Proportional Hazards Models
> ### Aliases: cox.rvph
>
> ### ** Examples
>
> if (requireNamespace("KMsurv", quietly = TRUE)) {
+ data(psych, package = "KMsurv")
+
+ psych$sex <- factor(psych$sex)
+
+ fit_step <- cox.rvph(
+ data = psych,
+ time = "time",
+ event = "death",
+ covariate = "age",
+ adjust_vars = "sex",
+ method = "step"
+ )
+
+ print(fit_step)
+ summary(fit_step)
+ }
-------------------------------------------
Current K = 2 (number of segments) in progress...
Error in a$specials[[i]] : subscript out of bounds
Calls: cox.rvph ... model.matrix -> model.matrix.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(cox.rvph)
>
> test_check("cox.rvph")
Saving _problems/test-cox-rvph-108.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cox-rvph.R:100:3'): step method returns a cox.rvph object ──────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─cox.rvph::cox.rvph(...) at test-cox-rvph.R:100:3
2. └─survival::cox.zph(fit.current)
3. └─survival:::coxph.getdata(...)
4. ├─stats::model.matrix(fit, data = mf)
5. └─survival:::model.matrix.coxph(fit, data = mf)
6. └─stats::delete.response(object$terms)
7. └─stats (local) off(a$specials[[i]])
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘cox-rvph.Rmd’ using rmarkdown
Quitting from cox-rvph.Rmd:39-58 [step-example]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─cox.rvph::cox.rvph(...)
2. └─survival::cox.zph(fit.current)
3. └─survival:::coxph.getdata(...)
4. ├─stats::model.matrix(fit, data = mf)
5. └─survival:::model.matrix.coxph(fit, data = mf)
6. └─stats::delete.response(object$terms)
7. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'cox-rvph.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘cox-rvph.Rmd’
SUMMARY: processing the following file failed:
‘cox-rvph.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc