Last updated on 2026-07-26 08:51:08 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.0-0.1.0 | 142.83 | 84.28 | 227.11 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.5.0-0.1.0 | 155.26 | 68.67 | 223.93 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.5.0-0.1.0 | 171.00 | 80.63 | 251.63 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.5.0-0.1.0 | 175.00 | 69.11 | 244.11 | OK | |
| r-devel-windows-x86_64 | 1.4.0-0.1.0 | 254.00 | 96.00 | 350.00 | OK | |
| r-patched-linux-x86_64 | 1.4.0-0.1.0 | 193.14 | 80.96 | 274.10 | OK | |
| r-release-linux-x86_64 | 1.5.0-0.1.0 | 214.50 | 90.24 | 304.74 | OK | |
| r-release-macos-arm64 | 1.5.0-0.1.0 | 35.00 | 27.00 | 62.00 | WARN | |
| r-release-macos-x86_64 | 1.5.0-0.1.0 | 121.00 | 265.00 | 386.00 | WARN | |
| r-release-windows-x86_64 | 1.4.0-0.1.0 | 246.00 | 106.00 | 352.00 | OK | |
| r-oldrel-macos-arm64 | 1.5.0-0.1.0 | 27.00 | 34.00 | 61.00 | WARN | |
| r-oldrel-macos-x86_64 | 1.5.0-0.1.0 | 118.00 | 265.00 | 383.00 | WARN | |
| r-oldrel-windows-x86_64 | 1.4.0-0.1.0 | 312.00 | 120.00 | 432.00 | OK |
Version: 1.5.0-0.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
libBigWig/bwRead.c:51:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.5.0-0.1.0
Check: examples
Result: ERROR
Running examples in ‘Rduckhts-Ex.R’ failed
The error most likely occurred in:
> ### Name: detect_complex_types
> ### Title: Detect Complex Types in DuckDB Table
> ### Aliases: detect_complex_types
>
> ### ** Examples
>
> library(DBI)
> library(duckdb)
>
> con <- dbConnect(duckdb::duckdb(config = list(allow_unsigned_extensions = "true")))
duckdb is storing downloaded extensions and secrets under ~/.duckdb:
/data/gannet/ripley/.duckdb
This persists across sessions and is shared with the DuckDB CLI and other clients.
Run duckdb(shared_home = FALSE) to use a temporary directory instead.
See ?duckdb_storage for details and alternatives.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
INSTALL/LOAD of an extension will error, and automatic extension loading is off.
Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
See ?duckdb for details.
> rduckhts_load(con)
Error: load_extension: DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). See ?duckdb for details.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.5.0-0.1.0
Check: tests
Result: ERROR
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ tinytest::test_package("Rduckhts")
+ } else {
+ message("tinytest not available; skipping tests")
+ }
test_bam_bed_coverage.R....... 0 tests
test_bam_bed_coverage.R....... 0 tests
test_bam_bed_coverage.R....... 0 tests duckdb is storing downloaded extensions and secrets under ~/.duckdb:
/data/gannet/ripley/.duckdb
This persists across sessions and is shared with the DuckDB CLI and other clients.
Run duckdb(shared_home = FALSE) to use a temporary directory instead.
See ?duckdb_storage for details and alternatives.
duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled:
Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107).
INSTALL/LOAD of an extension will error, and automatic extension loading is off.
Pass duckdb(allow_extensions = FALSE) to accept this and silence this message.
Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R).
See ?duckdb for details.
Error: rapi_prepare: Catalog Error: Table Function with name duckhts_bam_bed_coverage does not exist!
Did you mean "duckdb_tables"?
LINE 1: SELECT * FROM duckhts_bam_bed_coverage('/data/gannet/ripley/R/packages...
^ (error_type: CATALOG; : )
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang