Last updated on 2026-10-24 09:50:58 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 5.64 | 63.74 | 69.38 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 5.61 | 41.97 | 47.58 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 48.17 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 46.33 | OK | |||
| r-devel-windows-x86_64 | 0.1.0 | 8.00 | 76.00 | 84.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 6.68 | 58.25 | 64.93 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 5.70 | 60.12 | 65.82 | OK | |
| r-release-macos-arm64 | 0.1.0 | 2.00 | 17.00 | 19.00 | OK | |
| r-release-macos-x86_64 | 0.1.0 | 5.00 | 64.00 | 69.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 7.00 | 73.00 | 80.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 4.00 | 59.00 | 63.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 9.00 | 89.00 | 98.00 | OK |
Version: 0.1.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Xiao Lin <xlin3@mdanderson.org>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Xiao",
family = "Lin",
role = c("aut", "cre"),
email = "xlin3@mdanderson.org"),
person(given = "Xuelin",
family = "Huang",
role = "aut",
email = "xlhuang@mdanderson.org"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘OptimalTiming-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: optim.fit
> ### Title: Fit multi-state model for optimization
> ### Aliases: optim.fit
>
> ### ** Examples
>
>
> ## Not run:
> ##D library(OptimalTiming)
> ##D ## read data
> ##D data(SimCml)
> ##D
> ##D ## fit multistate model if the time to new treatment initiation is available in SimCml
> ##D fit=optim.fit(data=SimCml,
> ##D transM=matrix(c(0,1,0,0,0,1,0,0,0,1,0,1,1,1,0,0,0,1,1,1,1,
> ##D 0,0,0,0,1,1,1,0,0,0,0,0,1,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0),7,byrow=TRUE),
> ##D nstate=7,state_label=c("diagnose","cp1","ap","cp2","bc","sct","death"),
> ##D event_label=c("cp1.s","ap.s","cp2.s","bc.s","sct.s","death.s"),
> ##D treatment=c("sct","sct.s"),absorb=c("death","death.s"),
> ##D cov=c("age"),cov_value=c(0))
> ##D
> ##D ## view the content of this object
> ##D objects(fit)
> ##D
> ##D ## output transition probabilities
> ##D fit$treat$tranProb
> ##D fit$no_treat$tranProb
> ## End(Not run)
>
> ## Don't show:
> library(OptimalTiming)
> data(SimCml)
> SimCml=SimCml[SimCml$sct.s==0,]
> SimCml=SimCml[,c(1,2,3,4,11,12,13,14)]
> fit=optim.fit(data=SimCml,
+ transM=matrix(c(0,1,1,1,0,0,1,1,0,0,0,1,0,0,0,0),4,byrow=TRUE),
+ nstate=4,state_label=c("diagnose","cp1","ap","death"),
+ event_label=c("cp1.s","ap.s","death.s"),
+ absorb=c("death","death.s"),
+ cov=c("age"),cov_value=c(0))
Error in a$specials[[i]] : subscript out of bounds
Calls: optim.fit ... model.matrix -> model.matrix.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc