Last updated on 2026-10-24 15:51:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.4 | 19.03 | 159.35 | 178.38 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.4 | 13.18 | 112.07 | 125.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.4 | 14.00 | 106.97 | 120.97 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.4 | 13.00 | 108.52 | 121.52 | OK | |
| r-devel-windows-x86_64 | 0.1.4 | 25.00 | 160.00 | 185.00 | OK | |
| r-patched-linux-x86_64 | 0.1.4 | 19.94 | 150.35 | 170.29 | OK | |
| r-release-linux-x86_64 | 0.1.4 | 17.90 | 148.97 | 166.87 | OK | |
| r-release-macos-arm64 | 0.1.4 | 5.00 | 42.00 | 47.00 | OK | |
| r-release-macos-x86_64 | 0.1.4 | 13.00 | 174.00 | 187.00 | OK | |
| r-release-windows-x86_64 | 0.1.4 | 22.00 | 147.00 | 169.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.4 | 5.00 | 41.00 | 46.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.4 | 14.00 | 140.00 | 154.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.4 | 29.00 | 187.00 | 216.00 | OK |
Version: 0.1.4
Check: examples
Result: ERROR
Running examples in ‘CSCNet-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: penCSC
> ### Title: penCSC
> ### Aliases: penCSC
>
> ### ** Examples
>
>
> library(riskRegression)
riskRegression version 2026.03.11
>
> data(Melanoma)
>
> vl <- list('1'=c('age','sex','ulcer','thick'),
+
+ '2'=~age+sex+epicel+thick+ici)
>
> al <- list('1'=0,'2'=.5)
>
> ll <- list('1'=.01,'2'=.04)
>
> penCSC(time='time',status='status',vars.list=vl,
+
+ data=Melanoma,alpha.list=al,lambda.list=ll)
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Warning: Starting in glmnet 5.1, the default Cox tie-handling method will change from 'breslow' to 'efron' (matching survival::coxph). To silence this message and lock in the v5.0 default, pass cox.ties = 'breslow' explicitly. To preview the v5.1 behavior, pass cox.ties = 'efron'.
Error in `purrr::pmap()`:
ℹ In index: 1.
ℹ With name: Event: 1.
Caused by error in `a$specials[[i]]`:
! subscript out of bounds
Backtrace:
▆
1. ├─CSCNet::penCSC(...)
2. │ ├─... %>% ...
3. │ └─purrr::pmap(...)
4. │ └─purrr:::pmap_("list", .l, .f, ..., .progress = .progress)
5. │ ├─purrr:::with_indexed_errors(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ ├─purrr:::call_with_cleanup(...)
8. │ └─CSCNet (local) .f(...)
9. │ ├─survival::survfit(...)
10. │ └─glmnet:::survfit.coxnet(...)
11. │ ├─base::do.call(survfit, current_args)
12. │ ├─survival (local) `<fn>`(...)
13. │ └─survival:::survfit.coxph(...)
14. │ └─survival:::model.matrix.coxph(object, data = mf)
15. │ └─stats::delete.response(object$terms)
16. │ └─stats (local) off(a$specials[[i]])
17. ├─purrr::map(...)
18. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
19. │ └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
20. └─purrr (local) `<fn>`(`<sbscOOBE>`)
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘CSCNet.Rmd’ using rmarkdown
Quitting from CSCNet.Rmd:47-57 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `purrr::pmap()`:
ℹ In index: 1.
ℹ With name: Event: 1.
Caused by error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. ├─CSCNet::penCSC(...)
2. │ ├─... %>% ...
3. │ └─purrr::pmap(...)
4. │ └─purrr:::pmap_("list", .l, .f, ..., .progress = .progress)
5. │ ├─purrr:::with_indexed_errors(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ ├─purrr:::call_with_cleanup(...)
8. │ └─CSCNet (local) .f(...)
9. │ ├─survival::survfit(...)
10. │ └─glmnet:::survfit.coxnet(...)
11. │ ├─base::do.call(survfit, current_args)
12. │ ├─survival (local) `<fn>`(...)
13. │ └─survival:::survfit.coxph(...)
14. │ └─survival:::model.matrix.coxph(object, data = mf)
15. │ └─stats::delete.response(object$terms)
16. │ └─stats (local) off(a$specials[[i]])
17. └─purrr::map(...)
18. └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
19. └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CSCNet.Rmd' failed with diagnostics:
ℹ In index: 1.
ℹ With name: Event: 1.
Caused by error in `a$specials[[i]]`:
! subscript out of bounds
--- failed re-building ‘CSCNet.Rmd’
SUMMARY: processing the following file failed:
‘CSCNet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc