d508b270fd2d26008a31fd499064af64 *DESCRIPTION
851284dded9d91bcb9195b2fa72374ed *NAMESPACE
2983afdb7be034bac8f80543684231d7 *NEWS.md
391379180a92c4e741030c84fd115c92 *R/RcppExports.R
aa4d2018d50d1c1011d04861c7586c9b *R/birp-package.R
ee42a44bab35cb8e3d7433ef18558ae2 *R/birp.R
c18ca18cfec7739173c616a1ac6bd6e8 *R/birp_data.R
bf2d648d33772bdc8c4f164c1bd6edf1 *README
3c47258c6a0ed65aecf17af52442cbfb *build/partial.rdb
2c821df35c19add005108446fca16f6a *build/vignette.rds
642418da5717a0ca065455c1670606ae *cleanup
642418da5717a0ca065455c1670606ae *cleanup.win
3bc01f79cacd1d6536a9895962b4db44 *configure
bbbe0612df7b7c32e0e747701e85ec15 *configure.win
b943c9b8148c7aa607453c57dbf3bbba *inst/AUTHORS
d64bac229424484456bf7e84ed58765b *inst/COPYRIGHTS
91efb58bca2467e2b43628c3ac298993 *inst/doc/birp-introduction.R
afdd0816d088cbd662190aa10a3a1b19 *inst/doc/birp-introduction.Rmd
c3206c55b83d7367447712122e4d3841 *inst/doc/birp-introduction.html
dc110a9c81bd83d7f63c41b6d1b1d999 *inst/extdata/birp_BACI_gamma_configuration.txt
977c84137fa777cfe51730a7808b19ec *inst/extdata/birp_CI_groups.txt
3e475aee0953aa1be6940ef67947d292 *inst/extdata/birp_DeltaSummaries.txt
af89d48f7dd88907c9b9f93bc0a17889 *inst/extdata/birp_Method_1_simulated_counts.txt
af89d48f7dd88907c9b9f93bc0a17889 *inst/extdata/birp_birp_Method_1_simulated_counts_filtered_counts.txt
d24766d53437411710c7ec5a4b8c79bd *inst/extdata/birp_config.txt
7703bdab9c73e85c0c4727b9fc1cf414 *inst/extdata/birp_filtered_allFilesGenerated.txt
15334aa804c3b03ffd6ff5968526d4d6 *inst/extdata/birp_gammaSummaries.txt
4e16fe8c89cd5cadad51c648b7b07583 *inst/extdata/birp_meanVar.txt
13242ef4e86c4498ada43caf99ab4977 *inst/extdata/birp_simulated.txt
10b84649e069924348942ef571740e87 *inst/extdata/birp_simulated_allFilesGenerated.txt
048915c552de1013827b105f62a88e15 *inst/extdata/birp_state.txt
4283a2591edb7e04cd00a213f114e5a8 *inst/extdata/birp_timepoints.txt
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/birp_timesOfChange.txt
aa83675cabe9ac644dfcaaf41dccbbc3 *inst/extdata/birp_trace.txt
517972cb0d01e6f248c3a31ea5987df3 *inst/extdata/cameraTrapData.csv
fc00f439e1a2eaf1caf84fb6e91d0362 *inst/extdata/trackData.csv
cae88ae9d3968eb8394596ab3132ee6a *man/assess_NB.Rd
1a54df87dcf44490a1d73b129e378b1c *man/birp-package.Rd
a0d297181c4e3387bb20001df3ec6d47 *man/birp.Rd
5ed098554f7286512a5323cebb54496c *man/birp_data.Rd
ee8fad79d0b70474da6ede6fb388c03c *man/birp_data_from_data_frame.Rd
6c412d0df6f32f187e37cd0858aa0ba0 *man/birp_data_from_file.Rd
82efc87d85a1212939944c64bc9e33a3 *man/birp_from_command_line.Rd
a73d5f954edf06f2109e0647ee1e7063 *man/dot-addLegendMultiGamma.birp.Rd
e6720d6109477223614d1276f3cfebde *man/dot-addTextSingleGammaDelta.birp.Rd
c15f4adeb9bf114440d96edf7bb48476 *man/dot-addToList.birp.Rd
5bdc5b9453e9f3396f4aba878a0207ca *man/dot-calculatePsi.birp.Rd
afb82ff5f037609f00ff7d6b5c6fb3a3 *man/dot-calculateRho.birp.Rd
0b881a699e9aad6656cf29fb3d8cac81 *man/dot-checkFile.birp.Rd
c12bb54ce5781d5ed1f103a25d60f405 *man/dot-createObjBirp.birp.Rd
2c282b5ae90ab19c120999677ff9ca71 *man/dot-getDataAllMethods.birp_data.Rd
8110ee8898e34bf44fa218c1d3c7fd4a *man/dot-getEpochStarts.birp.Rd
746ee5186e05e60ec61b62050e0b9ad8 *man/dot-getLabelGamma.birp.Rd
a2a09ad64abc0bf523577f43aafb8117 *man/dot-openFile.birp.Rd
2cccae4d19f8b3b9b487616aea256886 *man/dot-openPosteriorPlot.birp.Rd
2699993b9f0b216092a12df7a172e33b *man/dot-parsePosteriorGammaDelta.birp.Rd
0db6e3e5ae5f9c98f6830afb437fb10f *man/dot-plotShadingPolygon.birp.Rd
91c78eef95674899927863d7502a2041 *man/dot-printPostSummary.birp.Rd
83ce7c14f4079dfa33457cb14cc52b9d *man/dot-validate.birp_data.Rd
6bbf180ee2e56ccd1877af2babde076a *man/plot.birp.Rd
1237b0af44bc1badaf9309bd5095291d *man/plot.birp_data.Rd
fd8d8f2979f7eae64b3e820df2d5ad21 *man/plot_epoch_pair.Rd
7743c03fe89b8a05c46e0407babb60f2 *man/plot_mcmc.Rd
c3f97b2b9fc0aa840d2ac3b1c5c6d4ea *man/plot_trend.Rd
5e92adcdd2a2edefbc66ea380fd3d942 *man/print.birp.Rd
563e86fd4f1a65226c8e5d775bbe88df *man/print.birp_data.Rd
5e458155249a76510747acc8eb3bb87f *man/prob_step.Rd
f682f2afafec32535861632da1c8dea5 *man/prob_trend.Rd
cfdb2f20e6ccf6df1e1ec0229da9573c *man/prob_trend_diff.Rd
e9bb00449243db7b04d990e17658ed6a *man/simulate_birp.Rd
5875091460a68739c5d958b82d5c6cd8 *man/simulate_birp_from_results.Rd
e90d3bea12a6a25227a17c2f5a3d844e *man/summary.birp.Rd
95715e6d47f973aada1794142c544828 *man/summary.birp_data.Rd
2e89e7b12f238a212d8af7f879f8434b *src/Makevars.in
496fbdff50c14b57a38300e9bfdee113 *src/RcppExports.cpp
bcbf68c3820fc9f686d86e9173b3b864 *src/birp_cpp/CMakeLists.txt
dccfe79e8b0d63892571b40d85152c59 *src/birp_cpp/arma.libs
723f507bc2bea2862f4015e375af8cae *src/birp_cpp/core/BirpDAG.h
f1aba73d50f84e68855f68bbce2f3b62 *src/birp_cpp/core/BirpTypes.h
5098832b5c20bd70a7bd7eeb4b6f0675 *src/birp_cpp/core/TBirpConfiguration.cpp
89880ab5307be062f031d1bf5a146cef *src/birp_cpp/core/TBirpConfiguration.h
b9a40e9f85ab6a1b5e3d1bcd09ea4a3e *src/birp_cpp/core/TBirpCore.cpp
db6583594dfb7daffe359f063dfe0da9 *src/birp_cpp/core/TBirpCore.h
2b382a1ed688d21f3ebcb153166352c7 *src/birp_cpp/core/TBirpPrior.cpp
b2a920e5d66e091150c945e773b15d34 *src/birp_cpp/core/TBirpPrior.h
5f9de951a9536c8c0441cec2cf181d0b *src/birp_cpp/core/TBirpTask.cpp
8a71cbcc24d4c39fbac1cb0731d46a1e *src/birp_cpp/core/TBirpTask.h
19893600112463285df6f11024091b71 *src/birp_cpp/core/TData.cpp
81a80e17156179bdb96fc583d3be2d12 *src/birp_cpp/core/TData.h
972fa733042569a87dfc83674e509cce *src/birp_cpp/core/TDistributions.cpp
553b37a6ba4072b808ce2c7ca6017a2b *src/birp_cpp/core/TDistributions.h
f309de481202a8db243c486ceea02e15 *src/birp_cpp/core/TGamma.cpp
14f52eb3d2b3bb7116ea7e164f101fbf *src/birp_cpp/core/TGamma.h
103445d66386477dfff5ff2d0015a8ad *src/birp_cpp/core/TModels.cpp
efcfebde4a8a6d930ca7c969739338a1 *src/birp_cpp/core/TModels.h
6d405a92e2271847f7e47308d43dd199 *src/birp_cpp/core/TUniqueContainer.h
c131403bfa6e77826152a394287ec12e *src/main.cpp
afdd0816d088cbd662190aa10a3a1b19 *vignettes/birp-introduction.Rmd
