bccc0a6d6b88f1201376a6547162e054 *DESCRIPTION
cf1c460b794330086ce3a2efdc212dfb *NAMESPACE
c15c4d0e6c700281a5a540c158a79d9a *NEWS.md
1a9a8d8c6da38da8aba6c24b2527b695 *R/ConditionalFactor.R
7eb200d29829c9c741206a8e8905ba0e *R/DifferentiationCholesky.R
05ab7a7815334254249217df563ebdaa *R/HarvilleODE.R
e008aef1e81ebeefd6e585283ddcf530 *R/LMMsolve-class.R
ac19b0fc88e2d3a3a851b0cfb4ebfebc *R/LMMsolve.R
d989264c03e777693af24a43788d9b85 *R/LMMsolver.R
317d1376f21a2a99e46f162a92493338 *R/RcppExports.R
1b66f3f7e25b7efbb07681b3c8688497 *R/chkInputLMMsolve.R
c42361b7afa323ee57f6628a433b9f05 *R/chkResponse.R
13dad31607017bee98420bc1c704db93 *R/chkSplinesFormula.R
3a9a10dce6a30d7dae6cc4c25ed60471 *R/constructFixed.R
5ceff350518ca3b1226a01b3ba8e6f49 *R/constructGinv.R
333a1ce7e29d2fa4ac16670e21b4556b *R/constructRandom.R
b54fe9ef6507272cf7c97698501ec095 *R/constructRinv.R
c96c0446a99b7ad7bd184f4fdbbb22fd *R/data.R
0b689e749a8bfbee311339e1984bda77 *R/diagnosticsMME.R
5dc4bcaa06dc210d4e0ce9f213626d31 *R/displayMME.R
a2f6523179e5720e768ce76d61109b86 *R/effDim.R
9783d43459040b14c936f7be0c574c60 *R/fitLMM.R
0745d24a16fce92cfe8529a8cefcb5d1 *R/getHeritability.R
ee5b2f69a2343d5c5320b96d84efa573 *R/getWeights.R
b14eb904120565706c68bcb106d81fc3 *R/ginverse.R
5a7be0095c8f14ab59c3a78336af7e17 *R/mLogLik.R
407d0ac5dd30de8c87280a6ade8dbfbc *R/makeGrid.R
5b748f48779ddede0ad492efc42431e0 *R/multinomial.R
0789d8828cedde130898f7961f142431 *R/obtainSmoothTrend.R
2d8b71b5dd0f100dbdc7c9dad70fc315 *R/orthoBsplines.R
a2976d4724ee07be4ad97c22deb3736a *R/orthoModel.R
705ec720e422a26683139d09a514ac97 *R/predictFunctions.R
9fc5b696e2c54d7085482c4fd6170cb4 *R/sparseMixedModels.R
7d45bc0a287ddcd4252697c15380a0dd *R/spl1D.R
71594e4273a9a58a47de74a0dd3e92ac *R/spl2D.R
c9ed7af33e405214641517b9540850d4 *R/spl3D.R
bd11325c77e2e50097acde046d8ac906 *R/splinesFunctions.R
9ea338ba2a7127a71ad130abd7309b2f *R/utils.R
419de9fb96c958f339cdfce8e96e5538 *R/zzz.R
0c8ba7f07bc4aaf4fee4c3d4bb72978c *README.md
6af8e7644a2c366a25339b1923c9a048 *build/partial.rdb
2bd21bb861c092e47baee01557844724 *build/vignette.rds
97615ac91b3c637f68b29b2f314d9e1b *data/APSIMdat.rda
671595dcf1fb85510cce1e613349374b *data/SeaSurfaceTemp.rda
31b07a433c7463d4d58769abd7daaba7 *data/barley.uniformity.trial.rda
1a506d5edd933940ea854e5c50d39130 *data/multipop.rda
cb5c795567b497ce61a6e668c75fbc99 *data/oats.data.rda
12117214de21024d6931a6ca4edd2d84 *inst/CITATION
5504d6c9c705d0c613619a22bd38835a *inst/doc/Solving_Linear_Mixed_Models.R
f8c1b83a5454d5e15362f1c0ee611fea *inst/doc/Solving_Linear_Mixed_Models.Rmd
4a19754e767a1d1b2c559f647d9c0347 *inst/doc/Solving_Linear_Mixed_Models.html
3e5088e2c568353291ef6b87d248eb71 *inst/tinytest/GLMMFull
425e3c2c18c1ac7ca997c6d1d3ca95fa *inst/tinytest/LMMsolve0
1e585cd548e3fee26e6012d8a3f44bfe *inst/tinytest/LMMsolve1
88adb806f4b3e100e52e07320fab4c40 *inst/tinytest/LMMsolve2
dfc422250b676d3035badc6eec07be27 *inst/tinytest/LMMsolve3
693e4dbac43a2f06a8a34436d8ee7613 *inst/tinytest/LMMsolve4
edf8583016b39d2da8f49d1990489562 *inst/tinytest/LMMsolve5
ef45e97059e1872abe7682d22ac47c4d *inst/tinytest/binomial1
54e2e2fd116328684c4e49a121e20be9 *inst/tinytest/binomial2
2b0d823e1399b79334415e5f455c94ca *inst/tinytest/binomial3
60b4551f5c44071c8377a11f88aad1b6 *inst/tinytest/cfFull
656135070d8e155aedf191adbb701449 *inst/tinytest/effDim0
4bd6826a5b430fc7abeb437866247b76 *inst/tinytest/effDims
0693a42241820afb51a766739f7083c0 *inst/tinytest/gam1DFull
f841dec24bb4904dfdb24774e66ec790 *inst/tinytest/mLogLik0
8b6d127c4868c04732ef02f9fa0c3ee7 *inst/tinytest/modCoefs
ac7cfbba4df3b6e9c105a88656b558f9 *inst/tinytest/modCoefsSe
0383d34d56d22f08ccf1845cda8445e5 *inst/tinytest/modFit
a18627d23d66d6d364f2cd257eaa8e1c *inst/tinytest/modResid
0684d3360dfd2f1adcf65638b3d1ec1e *inst/tinytest/multinomial1
156309135f3c52de9846185d746e03dc *inst/tinytest/ortho_fit1
9727ef3119f99e6a34fb9eef23aa0001 *inst/tinytest/ortho_fit2
7bba310333c43fe6c0b4cf3a551c08d0 *inst/tinytest/pred1
6b71b344a3939549bafa9c97f9bab716 *inst/tinytest/pred10
adfdfe1fdfe8a0c6538fd71b32bc9fd1 *inst/tinytest/pred2
45ea4743a242d5b352626ffb4e6b8152 *inst/tinytest/pred3
f90f37f028e53da4d94f619e8b10ff29 *inst/tinytest/pred4
f90f37f028e53da4d94f619e8b10ff29 *inst/tinytest/pred5
3765505db0295a04b6d1a5a0e58b6a57 *inst/tinytest/pred6
266c840a06cead653d35d2a7574078dc *inst/tinytest/pred7
99c2695b9e614fb695bf036472e29780 *inst/tinytest/pred8
528089efb72037f9bd8ae75699771e8a *inst/tinytest/pred9
f7a1fb1736e44ecc7429adf592dee383 *inst/tinytest/smooth3D1
d3af33938bbb620e39d4a851e0c0004e *inst/tinytest/smooth3D2
6c9fc6f8372e05f6ecbd6765b3177392 *inst/tinytest/spl1DFull
41cf2f93a96a5021d173c06e40aa5220 *inst/tinytest/spl2DFull
4cbefafb0bd03c485fe8d3aa4a7e077c *inst/tinytest/spl2DFull2
281331b64683d22e99cf076c18850413 *inst/tinytest/spl2DFull3
336568824b053c10412472c93870942c *inst/tinytest/spl3DFull
dd8b8f6587f806b4e7935c18d063ced0 *inst/tinytest/spl3DFull2
344f438f0305cfa2b9e2c8f378b7f99f *inst/tinytest/spl3DFull3
951fc8783e263f8021206616e20cf762 *inst/tinytest/test_GLMM.R
a9000bcb31b4507dc82e1c6a88db812b *inst/tinytest/test_HarvilleODE.R
1bab121da07d1df6177198b88ee427e2 *inst/tinytest/test_LMMsolve-class.R
f514c8ee68873f35f2ba46ffb7d5ad37 *inst/tinytest/test_LMMsolve.R
29b9e6b363a9bc6e4b8c27e2ba460bac *inst/tinytest/test_LMMsolver_chol.R
ae564f94be701080bf317bd6312e21ac *inst/tinytest/test_MME_functions.R
9f8f68af8283034a6408c5561eee3d01 *inst/tinytest/test_binomial.R
87324eafd244b7228a6c918ae41f10e6 *inst/tinytest/test_conditionalFactor.R
e1ba18f1c458c27eee69387d09b125ad *inst/tinytest/test_effDim.R
6d01adc1fa2d1a0e642950ac7109ba92 *inst/tinytest/test_gam.R
0194a83ac561ac97809d976ba8e05602 *inst/tinytest/test_getHeritability.R
098d14ae9f79680d027470271031ff05 *inst/tinytest/test_ginverse.R
1bbaf50d8172c9d0b2f4b35c382c3fce *inst/tinytest/test_internal_functions.R
b92bafca3b8aa61877e091b52b3ae559 *inst/tinytest/test_mLogLik.R
789428727ffa736a3ceefe8ccd2ea87c *inst/tinytest/test_multinomial.R
836d3bb074949499567cb43134fcc9ad *inst/tinytest/test_obtainSmoothTrend.R
839c64116145c9b0cf69baaa81a185ae *inst/tinytest/test_offset.R
7081f4b8b8f7ad4c2a35584658818047 *inst/tinytest/test_orthoBsplines.R
58d5d4b715e40015aecd789bda4d819b *inst/tinytest/test_orthoModel.R
87b24d474b0d05afb49f8c958c8493b3 *inst/tinytest/test_predict.R
14ab1fe5fb89db1f7ad3fcaba09bda78 *inst/tinytest/test_spl1D.R
94fad418817c083cb331fca477a0f876 *inst/tinytest/test_spl2D.R
e426a73ed3c9358ff8d083f5a2151933 *inst/tinytest/test_spl3D.R
ce8bd9326508d3b97db39b2d21253efb *inst/tinytest/testdata.rda
59be06f811a17dc05658071ed0aeb2b7 *inst/tinytest/varComps
4861c52b29fe9ca96d4fae50a924a97e *man/APSIMdat.Rd
52f445505cb8118597cc02683a999f7d *man/Bsplines.Rd
0b1f38a85e7e8d3d9b38fae1373e7faf *man/LMMsolve.Rd
b8a723226c9ea707fdc33e2bf705f83f *man/LMMsolveObject.Rd
d08a8b949ce509f008f6159e78e4898a *man/LMMsolver.Rd
b7c68ea7b080f1ea558b4ff9028f21b0 *man/PsplinesKnots.Rd
f614ea1b64ca2f4cbea3355a8e919c70 *man/RowKronecker.Rd
f4d7aff876a2e0dbae149ae1bf75d08c *man/SeaSurfaceTemp.Rd
325e614a0e939d6c7a9591a89833d507 *man/as.ginverse.Rd
68d54b4f138aa1fbe6876f483d80a04b *man/barley.uniformity.trial.Rd
513e7c877240390503b4d6b7324ee017 *man/calcStandardErrors.Rd
ddcc2aebbe90658382b3587d8ddfd09c *man/coef.LMMsolve.Rd
1a8038f665c3eccb5b798e22d579bc86 *man/constructRinv.Rd
d53739515274cb5d139b0288e5fd9eb6 *man/deviance.LMMsolve.Rd
8f518eea269a923003bc1cafe75ba61e *man/diagnosticsMME.Rd
a7248e6ecc383f0b11d838d43d7b9b64 *man/displayMME.Rd
ad41100cd9e7787779c2dda559de44cb *man/effDim.Rd
ee96cd4d4e91df23704199fa4ae70a0a *man/figures/README-Plot_USprecip-1.png
0d1387fc656c05cdab0cadf3d8720bfb *man/figures/logo.png
5df891a9bd27d39b40306204759ca241 *man/fitted.LMMsolve.Rd
b534cc08b695160aefdd2865a1de1ef5 *man/getHeritability.Rd
6cfb68c1e30d16594bd43add2d27e8c6 *man/logLik.LMMsolve.Rd
202ed0458585f6c0133188a2f7a76df2 *man/mLogLik.Rd
b15ddc0e5142d1f11f55017b1d8f671e *man/makeGrid.Rd
881f49ab95d9fe5921eefee51c1ea8a9 *man/multinomial.Rd
defdfa03e25a25e322e60d197d980a9c *man/multipop.Rd
c0413be9c2b41461a1bb2423d778712a *man/oats.data.Rd
4c767550a11743e2206afe5a6318fb69 *man/obtainSmoothTrend.Rd
f0924f3dca9429bba86f5110354454c0 *man/predict.LMMsolve.Rd
3c96bc82052d36356bbcd5366ff69a12 *man/residuals.LMMsolve.Rd
00251da983a44ac46eaaeb5eff60c4ba *man/spl1D.Rd
1fd7b02fafcd451ce70461e92be73032 *man/summary.LMMsolve.Rd
9482b5226562cd60585aaa1336333c82 *src/ADcholesky.cpp
20dbe6548c31cb38725e11e9c9e4e44a *src/ADcholesky.h
c869160706212bbf27ff90a82317e4c7 *src/AuxFun.cpp
8eb7408449c1f2b271a444bad5a88012 *src/AuxFun.h
641d3219aa800e447cb562407964d980 *src/LMMsolver_chol.cpp
9661e50f38957d51d405bae71fcce036 *src/Makevars.in
c89d6b95d18721894ab45341d0fbc7a6 *src/Makevars.win
794b7b898e62645e0f3c0c84a6166298 *src/RcppExports.cpp
b1dec28cf5241e13106bb2da62939743 *src/SparseMatrix.cpp
40b48e3516dd8414b6a8e7466d1bf209 *src/SparseMatrix.h
9e4390bb538b4acc21e316cb80e17060 *src/cholesky.cpp
0324d2daa76e584eeb3aab076236943d *src/cholesky.h
46a4f3f27fea524d58af3b6ca935f37e *tests/tinytest.R
f8c1b83a5454d5e15362f1c0ee611fea *vignettes/Solving_Linear_Mixed_Models.Rmd
55693d42374b69bb1ed4d280da02faa5 *vignettes/bibliography.bib
