6fb5248d971dd94fac4cdc486d17c8eb *DESCRIPTION
c7c0883cf8634a7de48e2b01f7aba8c1 *NAMESPACE
f66c7a1b81cb8c15c4dd7aa0a920cd93 *NEWS
19be8a08df6db104192b8a1ab8aa38b2 *R/alunll.R
16ca6c4d5bb457185c72bb9db123490f *R/convert.R
8259e6c4d574abe001cc314f3aa49b8f *R/metrics.R
8444235d4489e0f2c656dbb6b4b0b836 *R/ml.R
16f17d533f31e23b305b44287f220a7b *R/time.R
d29cc10e7c08a0b90d1f9463fc889cf6 *R/utils.R
9210c5cd44b8deffc9927d6d910394a6 *R/vignette.R
5d508a2de881c2eec95cd578db490083 *R/wrap.R
83c947c0c80897c6c4cf2680b60e6ce5 *R/wrap_sim.R
31c10d42db7eed5af0acff610582433a *R/zzz.R
153c862940e1ddcefe57a673227fc9c9 *build/vignette.rds
a084117a98f52c7d161b26ce35a31f3b *inst/doc/transmission.Rmd
8f8454943f0806ce6de8c2e8f08425b7 *inst/doc/transmission.html
f7a63169efd1dbdc11cccbce80a26994 *inst/examples/basic-ex.R
88084a0d076ab803408ba37b8d2e8d95 *inst/tests/test-indifferent_to_input_format.R
712e86585eedf38257904592ce11c8df *inst/tests/test-likelihoods.R
c528b659a262379a45e44da43a78ffd4 *inst/tests/test-loading.R
da48acba2434e7c7b558954c4e1cded2 *inst/tests/test-reproducible.R
fa2f29b0aa02ebacc712b8414bc0f9c1 *inst/tests/test-sim.R
3b4dd2727332b71abf258bd556dbea12 *man/GetFullDataLikelihood.Rd
2de0019853c50af5635e5840b9db96af *man/MaximumLikelihoodEstimates.Rd
bb9cb1b39df3eb3f8e18bd5e359a6bf4 *man/Vswitch.Rd
c628ce2280184f5f26ef7da96958d664 *man/alunll.Rd
f1907875c5666873a969dffc151f553a *man/computeIPPD.Rd
8d86c9ce38baa78a38a2ca4c710b82b2 *man/computeIncidence.Rd
71e76888f0de51facbe8c154a3f8bf2a *man/compute_patient_days.Rd
ddf9afaddf70d8864bda25a9e8cbc4ff *man/continuous.Rd
f2e5d6d35efa93119cdf1512709a5fae *man/convert.Rd
695709f32bc0ded5a348a5cf8c12b7ad *man/event.levels.Rd
98da1f85450592a5f6cc22c2663ef6f0 *man/formatTime.Rd
ede4717ceeda124916f4453035b5ecff *man/helpers.Rd
fb3ca60dc8ce8bf3d47af7e2b6cc03a3 *man/iutils.Rd
e16a86e38fe44fe3baec185b64069bd2 *man/mcmc_chain_plot.Rd
111214ea6be1c60520692ca4859339da *man/metrics.Rd
6702daedd9a02af539bb63e629c1c691 *man/print.proc_time.Rd
ea9e008cdd101637c1354cd7740190d5 *man/simulation.Rd
94a4fbcc56cfcbe127592e4e17375738 *man/tmMCMC.Rd
a31bd472cfdd53cc7c70802b13e92f68 *man/transmission-package.Rd
e776080db4a8ff5b22a2d24d556fea1e *man/variables.Rd
f9d3e908b3c74fda469c9a2523ed0063 *src/Calculator.h
256b85debbb5ee53e82d60950a9b2945 *src/Event.h
0aabfb436b33cd06ac9c2d1b67e99730 *src/History.h
a51f8f81ad6f97d18c3e34276ac18822 *src/InfectionMCMC.h
e0b7174fbc6d6a94ed0b6c3c34ad0433 *src/Makevars
6903b12e464ed3ae51379ef916cff924 *src/Makevars.win
3b3ec6be5d5c9ca5455c715d93f3046c *src/ParameterSet.h
d2b7aee871bd296a00f03856ad1c5e9d *src/RcppInfection.cpp
42a6786b9e921fe62a15874e5da2e09b *src/Sampler.h
1fed2ea3f8d8c8f7b0311cbe7995b93d *src/UnitHistory.h
d5781c1aed64421d341a73bba1a47048 *src/infection.h
28b6b2c4570caaef9d433aa4a120e96e *src/sim.cpp
e8d93cde8977596ef0f9389139869685 *src/sim_event.h
ca538fe68b903258ede7cdded14e2663 *src/sim_patient.h
5f1a8ec8aa932db6cea4f9c1dc67e17a *src/sim_test.h
c7ca15bc48a7a5834bbd2a3714eaa87c *src/sim_ward.cpp
a1dc77116f5e604d68a2c8db95aba03d *src/sim_ward.h
fdee91eb11a5265012d3eb5adf7b40e6 *tests/testthat-package.R
a084117a98f52c7d161b26ce35a31f3b *vignettes/transmission.Rmd
