ad495a01ab5b7365e6a2727fd88642ad *DESCRIPTION
1c5fb114d46fa0641b61b07ba8530259 *NAMESPACE
923521f40a68cefc86265d14b4a05b53 *NEWS
db7ba51f9c19b4c982607734daf9c9ca *R/HMMplot.R
9ea8cd4a37fe516d6b4c113340a9cb32 *R/RcppExports.R
f978e13e72f0d019967bd6b140bf63f3 *R/SSPlotter.R
165a02f81c29866de258f8e32e010ec9 *R/biofam3c.R
0c9fecc423837951ad97a869cda2b0a8 *R/build_hmm.R
d0f930e70f5efcf57fd8fcd807c60d9f *R/build_lcm.R
caede8c963095be257d8228d1c52e95e *R/build_mhmm.R
c42d34b5f5dd9d77c5c600f824bce860 *R/build_mm.R
61adcdf1c01a39d7c99c22a6485f461b *R/build_mmm.R
c57088eec2ae645eb7fdbaa032620a48 *R/check_deprecated_args.R
3da8086738691f70003b857cd1959a03 *R/colorpalette.R
c501731291a9aa14d341e60442cbe0fd *R/combine_models.R
8b2c921c5c083c689c650cf97b0f2a83 *R/estimate_coef.R
a655040e14769b62b237b26ab448b305 *R/fit_model.R
77d4f3b6bfce8a721c926b971c9c6fb8 *R/forwardBackward.R
163e2a754ff8db901fea9849b6fe9ff7 *R/gridplot.R
38c2ff380aed5029a23c4f54e8327e4c *R/hidden_paths.R
e9a202767bc83aebed76a38e87798dfe *R/hmm_biofam.R
ab2e784177d1d691fabad95439319d17 *R/hmm_mvad.R
496c8ac7809e2bac50d5a43cf376288e *R/import_seqdef.R
707cca9dfdea084fb6902fb026c1c5cb *R/isColor.R
a70385523cf2a6428faaba87240849d3 *R/logLik.hmm.R
f6d6e1ddb72f66ac43fd7a1d3c119a43 *R/logLik.mhmm.R
aec5ed442b0c4643f5acd5c16a52e0b6 *R/mHMMplotgrid.R
399675fa3ced2bc8150faf424e9e38f8 *R/mHMMplotint.R
982436a14dae3c5dfc1b6be0b2d1b473 *R/mc_to_sc.R
360c359f97d4f3bb0bf02e02676eccb1 *R/mc_to_sc_data.R
f678fdd2298abadf0ef822e95f1ba3cb *R/mhmm_biofam.R
d3982e5832836ccf9c5cc1fbc22f96db *R/mhmm_mvad.R
3a5c7bd467065ab9310cd2beb9569f5b *R/mssplot.R
c7f53b606f825d5d58ea2fc45c3709b6 *R/plot.hmm.R
7e4373fd8b01326e4280165d02d9668b *R/plot.mhmm.R
5e6374a1342f6af76df63a5edb080818 *R/plot.ssp.R
01aadc3edf15fa027e5786dc5a219cc7 *R/plot_colors.R
4e9cbdd59c6a045ed3d4cdee6c0f5019 *R/posterior_probs.R
1b34a268e69de66c179193c1d15896ab *R/print.hmm.R
bb251626065bd2b982524ff6fc10ae59 *R/print.mhmm.R
1ee30703cd7779651aecca4dcb10a181 *R/print.summary.mhmm.R
b132037d5958d8f623d81b9eb56250d5 *R/separate_mhmm.R
3afdbcedddea2a60142d90f99511e0b0 *R/seqHMM-deprecated.R
1c743aef4f24801d15a7b7ca766ecad6 *R/seqHMM-package.R
f3c09851e5256bb46561267738ddb941 *R/simulate_hmm.R
d3116b04509e559e8eccf0d141d2f1e7 *R/simulate_mhmm.R
18794c287dc840452d948e9ae372c225 *R/simulate_pars.R
d89f049fad615c06487b2f3ce9056d37 *R/spread_models.R
c0f5e45d5daab3e8ed5c7b199b038c15 *R/ssp.R
2c30c42276eed790e75dea091ae1a7a8 *R/ssplot.R
3f88d77c39dc280e6111711c513e80dd *R/ssplotM.R
9436feabbdcc5d2a701449aa8c68ac77 *R/summary.mhmm.R
0a8f8d4c287368444e0ac6bb418bed01 *R/trim_hmm.R
98c7d35e8dbd692cb5a44e6c324435e6 *R/vcov.mhmm.R
03de91ed45f23c74daaf7d3aaaf61b9c *build/vignette.rds
24d8098b9e16c0fd497d674af8c740c9 *data/biofam3c.rda
07df3b55fd8db67073a1d34aaa35630e *data/colorpalette.rda
dd187977cf5880d446b623d1c8982a88 *data/hmm_biofam.rda
fd3c82e79109fd44a48e6d07597f4d19 *data/hmm_mvad.rda
57777ad97b24b5d51d3495527525dbc0 *data/mhmm_biofam.rda
3889dcd736e00a5e199e246dfc5a2f9b *data/mhmm_mvad.rda
8ac4505262440111a0d085f2b46da045 *inst/CITATION
60ff1a64048dcb31aebb9926f9dd88a7 *inst/doc/seqHMM.R
b17f7bae28c88d8de6b9986ee17e5803 *inst/doc/seqHMM.Rnw
87a29c35e9bb1f22d3e50eae3e7d88b2 *inst/doc/seqHMM.pdf
ed1271ea9bd733065d3c99d5a7f3a209 *inst/doc/seqHMM_algorithms.Rnw
d64af1b7e261703a33d769ce8025f25e *inst/doc/seqHMM_algorithms.pdf
d45d8583fa944e84271be94f4cc31968 *inst/doc/seqHMM_estimation.Rnw
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7a04a4ce8b6b631c446b17a4228e3c98 *man/build_lcm.Rd
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9bf7bb73f9e4a9527e83497c7ead28bb *man/build_mm.Rd
17a3cfce21f96375e4634d4f54a997e8 *man/build_mmm.Rd
38432acf7def301d109838499751f21f *man/colorpalette.Rd
d6ddf358aef3b23a0b2c60e3fb578f02 *man/estimate_coef.Rd
f0c5249ce11a3f2dd6989ec3b9bf09bd *man/fit_model.Rd
ee9b40c074ec340b4c3c840b6b4235ca *man/forward_backward.Rd
0e1b0af1135be2bae43c6141ee3feb3e *man/gridplot.Rd
1b416193366662c75a37f4dadb2bb64a *man/hidden_paths.Rd
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a0f097af171d4fba95b6dca119e76751 *man/hmm_mvad.Rd
1c968c4e13302c70dc8cda0f3a04e622 *man/logLik.hmm.Rd
1e7843fac13772cf5b1c59e9677dc25c *man/logLik.mhmm.Rd
1d7d44662661196465259b31cb51a832 *man/mc_to_sc.Rd
2353151babce9427aa2c0bef9971ef11 *man/mc_to_sc_data.Rd
9024922f877ae2c54e36c481c7c32138 *man/mhmm_biofam.Rd
5887e9181a838ecd087c040ed86c847e *man/mhmm_mvad.Rd
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1f38c64f027db24cc5213e2cacdac8d1 *man/plot.hmm.Rd
ddfb38854aca8d234eecb437bf020769 *man/plot.mhmm.Rd
2a2dfec369700ce8c19fa930a04a6511 *man/plot.ssp.Rd
0d79a316cd389e1ed521d1af4a8ea669 *man/plot_colors.Rd
215f4ef8ddc6802b97e7eecafd7cdbbf *man/posterior_probs.Rd
41f568ffd63482a8f155f7d0de32ef6e *man/print.Rd
be0c81c7d477e3359d22738ec19ddaa0 *man/separate_mhmm.Rd
411f7f95a8a4ac026988834de856607d *man/seqHMM-deprecated.Rd
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92d0733887cb2dca72a66e0251dfdada *man/simulate_hmm.Rd
a59a08ce16b275f8eba1d376cc3cf53c *man/simulate_mhmm.Rd
d1f98aae641180d9c15b8e1d33fc4f38 *man/simulate_pars.Rd
3641532256fc23cbfd066f44deea4aa0 *man/ssp.Rd
a1ec34241b14552007c9bef34aab1067 *man/ssplot.Rd
01aa3015575272a24ad76297b6f020bf *man/summary.mhmm.Rd
5e17311851590f5e5fdc601e7953afde *man/trim_model.Rd
80f25c9547f89240fce68bd4f932e6f4 *man/vcov.mhmm.Rd
1d54fe5025a3a0527838a42acf270b1a *src/EM.cpp
b884501a46e530f370c437fb96cffc17 *src/EMx.cpp
b16245a88d0b305a61417c6e8edf50ef *src/Makevars
de61efe1c81dae24349908033350fb38 *src/RcppExports.cpp
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3f79087feea85b300ce72675d7b4c8aa *src/forwardbackwardx.cpp
2644e6f65182726021bacd754678b59f *src/internalBackward.cpp
124765753caaf4109ac6afd0df7ea4e5 *src/internalForward.cpp
fc106ba3b4db61b0b0307b19c7026262 *src/logLikHMM.cpp
7624b73a47eb901e5d971799aa7453a0 *src/logLikMixHMM.cpp
ea9f081247bf5736810800c1022a418b *src/logSumExp.cpp
67eb40ad0a49a39ab3f6f1781c741953 *src/log_EM.cpp
cfb01511e23dad5b64e4e44cc60427c2 *src/log_EMx.cpp
4484c730f61a62737e2ee613d9b821ec *src/log_forward_backward.h
9e368f98352ae5b21b040b5c7dc2bc1c *src/log_forwardbackward.cpp
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9f2a3798a1c8ae8283f5519c53831668 *src/log_internalBackward.cpp
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266a2c281514dde17739b33567a8be19 *src/log_logLikMixHMM.cpp
4e7063fab88eb6463bf82b7c71dffa6b *src/log_objective.cpp
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141e4fcd4497604cbdc4523f12861183 *src/log_optCoef.cpp
7621a0c59fe10be93c3d0138953e1e9f *src/logsumexp.h
46e653d29c0fd52a02e158ce1dfc1d5b *src/objective.cpp
530c43ee32365f44508a2402dbf558b5 *src/objectivex.cpp
624f7a9e118f68efbc0e622c5ddd38a7 *src/optCoef.cpp
3e0a6f1b95933f128a1c818c9d24a1a5 *src/optcoef.h
df8bbdce2e4261696bf145f8e561a4f6 *src/reparma.cpp
b7005c66c1530bd3e0761c5e50db2121 *src/reparma.h
0238f430ed8b5f90c98d043b89da01ea *src/sa_opt_coef.cpp
299120588f91cf4eb31737f4b6f039e1 *src/seqHMM.h
9726182edf6db7d7697a8c65a5995dbd *src/uv_forwardbackward.cpp
47b684c7b2f2cb87e271a8ad9b4bce8c *src/varcoef.cpp
b8a610297c09eb66cb14cc3a98013a2b *src/viterbi.cpp
002d8ad9bb9e0a83aef0862f71642116 *src/viterbix.cpp
ee243842505fb247f54c45d79357047d *vignettes/references.bib
eb59b053d8663da8e0510f5787a8768b *vignettes/references_for_vignettes.bib
b17f7bae28c88d8de6b9986ee17e5803 *vignettes/seqHMM.Rnw
ed1271ea9bd733065d3c99d5a7f3a209 *vignettes/seqHMM_algorithms.Rnw
d45d8583fa944e84271be94f4cc31968 *vignettes/seqHMM_estimation.Rnw
f20eec12cd6f0cfdf24d044e7eb77d51 *vignettes/seqHMM_visualization.Rnw
