b0d1356668150d8eef84e41f29b283e2 *COPYING
89e824c2264538d5dcc04d9f124ea7cb *DESCRIPTION
a31cc7dfc0ad98f1fadb832479ba4eb7 *NAMESPACE
a443faad633ed5e8e7e71dd7827efc6f *R/constants.R
dfd3158a7ebc1d8189f8ad5173b4298a *R/data.R
d785b247509d658548e5de8e2a480245 *R/helpers.R
8b07e843f2b031de923fa6df4f6d58d9 *R/io.R
5ee6fe275fd4b2c4d21d6cc9aef299df *R/list.R
b7410d317103c0e703724f2d38401120 *R/matrix.R
b6a31863ee552aa9a7ff58148a03d0d2 *R/numeric.R
e48cb6bc485b84dd832d33982a9ac578 *R/opm.R
63798724a63156989ede25db5c5c554a *R/opma.R
e558295fb9d89a70231b456ecfacd9b8 *R/opms.R
6f387f96074e618c007b0be6fb94678b *R/opmx.R
3495cc1bc09948a8da9936b8d28569ae *R/phylo.R
334d09a07e038b1d6423fb5afae9cc44 *R/testing.R
ea7569acf21cf15fab015cde81fcc1d7 *R/well-map.R
f99f9d87da9694973fc176469bd0abcc *R/wmd.R
b8b2c424fd40a969ca53808cfb050692 *R/yaml.R
e922c70785a1ba502373229ed354a97b *data/datalist
ae97b5718811b7c141a86b8bd7d8f94b *data/vaas_1.rda
f1c442c8e1e0ab06751bc50ae5a2c519 *data/vaas_4.rda
ed4bd602ccfcdad22c955fd889ebd45a *data/vaas_et_al.rda
df0291963d07611e6c02ec1a830d405b *inst/scripts/run_opm.R
42aadb989f6f4a8024dc70c29cd3d8f0 *inst/testdata/Example_1.csv.xz
eed2d157d051e6cc1db3a7cfa20bcba3 *inst/testdata/Example_2.csv.xz
1ccc9dad635ac505ba7e5f295fa6ab8d *inst/testdata/Example_3.csv.xz
3f8c8eb8d7c8fc2d8b97ccb0f2564741 *inst/testdata/Example_Old_Style_1.csv.xz
ccaaf9e3fb8eb717d526760c6d5098d8 *inst/testdata/Example_Old_Style_2.csv.xz
cb2b85e33c248541e00af1d6f90d31f0 *inst/testdata/Example_Old_Style_3.csv.xz
5223bcdd9b747c3c78f3770adb2b11c2 *inst/testdata/Example_Old_Style_4.csv.xz
e26e611e66d3fd0f102f32a899fef60e *inst/testdata/Example_Old_Style_Multiple.csv.xz
7474136cbb537477e1b8ba348faaf6f9 *inst/tests/test_constants.R
fe24675b968dfb6401a1983e7ace353c *inst/tests/test_helpers.R
293b18cc2dd2bcb22ee3a4d404dc354a *inst/tests/test_io.R
e2fa39a96a288908db2c559e01589ca6 *inst/tests/test_list.R
18736c0d48f7231e4a21eed319bda1c5 *inst/tests/test_numeric.R
220af08664bc7042d145601c9d820587 *inst/tests/test_opm.R
f8b5876a19b6c810786968104cdc305e *inst/tests/test_opms.R
8589129398eb3a9944bac72a6000b2c7 *inst/tests/test_phylo.R
52ecfad5253ce4bb0a09cc51cc36837d *inst/tests/test_yaml.R
eefd426da890e05e8c1b095f98d76b00 *man/OPM.Rd
bd411a0ae240f94a1ad89c19ab844d14 *man/OPMA.Rd
a06b9a791e8f830361644cb53543a9fa *man/OPMS.Rd
79851d34b3b1a1471ffc74b182370bd2 *man/OPMX.Rd
e1b3e957a2cb487b388553f9504c0a54 *man/WMD.Rd
e3913b508d9bc943dd70170b14eed16d *man/YAML_VIA_LIST.Rd
aefe8a9adea66db7ba09ad1698f967af *man/add_in_parens.Rd
dea9a373a17ee1e28feac28a1476714c *man/aggr_settings.Rd
37b058851189778a86ced38a113fca79 *man/aggregated.Rd
12024330412a6aed7755b86f12a1bdcc *man/assert_length.Rd
e729999c549f967275fdb089e9928aa6 *man/attach_attr.Rd
9954bed7be7104776d76661ba6330d9b *man/batch_collect.Rd
0c51d8f7a862fd919bfdc1ad88936ecb *man/batch_opm_to_yaml.Rd
a5170618892abc1bd0b15cbe1b6fe017 *man/batch_process.Rd
8dac7a6e3bdff9413cf031725932bfee *man/best_layout.Rd
34a16ee2c22ce065afac4060492f2641 *man/best_range.Rd
c6d80286bb4ccdefeef061e4a5e8cb8f *man/bracket-OPMA.Rd
785d5568240ab5a96e3284f6efadd2ee *man/bracket-OPMS.Rd
119ccb5dbdeca3361875a7b8912bdf11 *man/bracket.Rd
5f5fb7ffc97bdeb41139028c9a2ea667 *man/c.Rd
78b28de2ef1f1fe51374376e10bf4dca *man/ci_plot-commaOPMS.Rd
0d1d28963e499b8cd01b33b8bfe1d5c6 *man/ci_plot.Rd
8ec34efd12770e62e703ac7e53b4dab0 *man/clean_filenames.Rd
e5b88e9d9a12f5427d8ecc456ec21472 *man/collect_template-commaOPM.Rd
beb5226877e6f2094f2e474f8792f41d *man/collect_template-commaOPMS.Rd
4e31d24f3631031a40e3d280514d5a0a *man/collect_template.Rd
f1ad28e617aad794352552786e2d5b0a *man/contains.Rd
dd2193ed330c611d01be61f55cb58269 *man/csv_data.Rd
2461ae683273406965e1113071d5470a *man/curve_params.Rd
4fb4a8861d560fc82b647d92228c390e *man/default_color_regions.Rd
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a089985d68e67c8bbe8ae22253534c8b *man/discrete-commamatrix.Rd
997dcd1ecb169ba3614b31ddeb5c881f *man/discrete.Rd
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ce7bcacf7d2a697e869159ba3b82abac *man/explode_dir.Rd
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95428421c171feea1b15eeeb0476b5a7 *man/extract.Rd
abdfc6010e17e36b550d8ab65c5c668e *man/extract_columns.Rd
177665d40a561dc15eebc2aa20a70af7 *man/extract_curve_params.grofit.Rd
ba97731d313595138a74f8eb32c88538 *man/fast_estimate.Rd
0b915eb6beab6bfa66a34174291deaa1 *man/file_pattern.Rd
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55fd19a0fb359f39f7b4e7ab0b1039c8 *man/find_positions-commalist.Rd
7249383a4f7818077be28732f002f8b0 *man/find_positions.Rd
623d0eab39c09aa76e69f04c337969eb *man/find_substrate.Rd
8817deb4f11b77df3e55423ba65e8d66 *man/flatten-commaOPMS.Rd
16c11790e8601bd444663fb25554dbd1 *man/flatten.Rd
5aab6c661946537d6954a25bc5564fd1 *man/flattened_to_factor.Rd
ff3d2e84c5dbd88031c4f37813afc54c *man/gen_iii.Rd
49fedeef190dfd73a271e34b565873b0 *man/glob_to_regex.Rd
468518cb5ff5bdb21f64db0ba0c029e7 *man/group_by_sep-commacharacter.Rd
ea27281348c4a22f1cf6abafa63d071c *man/group_by_sep.Rd
2f4e2dff0d2e4f365bbbefd28a1352a1 *man/guess_cex.Rd
6d47b00ad9c6f81b56555f2eb640e0a4 *man/has_aggr.Rd
5e8750017bafed5882d732aba7564298 *man/heat_map-commamatrix.Rd
a03bc7b142fba0e82d1d99507c02c3c9 *man/heat_map.Rd
de0f00370de03e12aef9bbe6caef9de3 *man/hours.Rd
abdfe00db9e67ba4468d5a7ff9921d22 *man/improved_max.Rd
685a1033c4a8775293cef92518adb5ed *man/include_metadata.Rd
a8d0cc90228b496ba4856573a5216e88 *man/infix-k-list.Rd
13ac7bc731dfda22408583891e4894d4 *man/infix-k.Rd
3c8d53d6138a13449889c7654ef4fe64 *man/infix-largek-list.Rd
3d66a9abcd74dc27a4b2eec0b47b12fd *man/infix-largek.Rd
200fb888dbbee55b718a5b1d70bb21b6 *man/infix-largeq-list.Rd
9c824c7052490197f24a8c254d228a57 *man/infix-largeq.Rd
3a81429901febab3bb8d62840a72cfdf *man/infix-q-list.Rd
31961b03cf3bd0797979d2fa5b9e4709 *man/infix-q.Rd
910c16956ac8c433a4aae89b18565a34 *man/initialize-commaOPMS.Rd
5a00ce388bcb35003b8ba443869c735b *man/initialize.Rd
0e73317547f83614f051f829bdb1293c *man/insert.Rd
2aaae58487b7318f1761b471f0028396 *man/is_uniform.Rd
95cba4a97256674a7cf23d413d47c308 *man/join_discrete-commamatrix.Rd
e0d3a5cae2ed5f52ae6b46ec1af920ca *man/join_discrete.Rd
3ee29b7bc543e2f988accf49bf92f520 *man/kubrick.Rd
831d6f76e75edb11460e5bd35506c5ed *man/length.Rd
71ddf5cac715fed32c381f2085d9ed4e *man/level_plot-commaOPMS.Rd
5c0581377ce6d2e828906e5b2cf82bb8 *man/level_plot.Rd
9587b34a27441400372732512c089fb3 *man/listing.Rd
4164c1bd29b134cdcdffc28b3ca66dc7 *man/main_title.Rd
2cb2444f2efcc3ea3b812a15234fc8da *man/map_grofit_names.Rd
5c81ee01318ab6f3603b70f902b5c93a *man/map_metadata-commaOPMS.Rd
a54a31d9e76409fbff0741dd7c86bd69 *man/map_metadata-commaWMD-plusfunction.Rd
e9374d0e85b041e850665e484b46a547 *man/map_metadata.Rd
d07986f0152f40105f274a3e69914710 *man/map_names-commalist-pluscharacter.Rd
480644dc11d8f07c377cf168bcd5b20e *man/map_names-commalist-plusmissing.Rd
d65c4132812acd625e8e7bb9b686a50d *man/map_names.Rd
637dec19ee1036a715046122ed4eb050 *man/map_values-commacharacter.Rd
f246fe95a3df23c6c2f3c7ae602b4836 *man/map_values.Rd
d2b1f932927a975d031732f493da0889 *man/map_well_names.Rd
78ef2cb381730c026202455b166ce47f *man/max-commaOPMS.Rd
a8814b65e3eca2f2b2817a12411b77f2 *man/max.Rd
691be058ac4894cfa0b46f7d16024743 *man/max_rgb_contrast.Rd
d03dd6a6c86ce7c83fcfeddd7b6287ce *man/measurements.Rd
baedfb79c0ae3cc80f4be7d3277c7e50 *man/metadata-set-commaOPMS-plusANY-plusANY.Rd
4715e89a92169f96f0e2e51d3b4ac1e3 *man/metadata-set-commaOPMS-plusmissing-pluslist.Rd
c1b18d26332558e2ff2a1e5bd773d300 *man/metadata-set-commaWMD-pluscharacter-plusANY.Rd
eb5820b738ba90c87abf428aa1aa5c5d *man/metadata-set-commaWMD-pluslist-pluslist.Rd
cba7e571253175234f83c95c8869f354 *man/metadata-set-commaWMD-plusnumeric-pluslist.Rd
f64ccb57d4fa0013c111e632c65e40f0 *man/metadata-set.Rd
791ac03c6c7c3a138a52bf3f6c24e90e *man/metadata.Rd
6301c979c1275a568d9d03c05f206289 *man/metadata_chars-commaOPMS.Rd
69c0c37fca7f7f0792a6dd0fbe34b46e *man/metadata_chars.Rd
d1259e48526158ef20267a69abb66ab8 *man/minmax-commaOPMS.Rd
26689eafc3e83c862147fe8a2bc6bd64 *man/minmax.Rd
72413ca7e82dc864d7b61b05349a5307 *man/negative_control.Rd
b91a2ed1824fecdd49e7c12359600ec0 *man/normalize_plate_name.Rd
b41524dd7433c3d20ac509a844c284f2 *man/opm-package.Rd
b54edf548790728dfc017cbe8551a340 *man/opm_files.Rd
d20a8f7df35293c11c2aaa18e50d8a5d *man/opm_problems-commacharacter.Rd
7a689703be2842fa3bbaec07e2e357e9 *man/opm_problems.Rd
ba34e3291ee8ca0897499fb5f88e1e3c *man/opma_problems-list.Rd
e62e5c4244b2bf8931b9e9314862e0da *man/opma_problems.Rd
7c1064e8dbb589c6af83a153780080e6 *man/opms-function.Rd
129a582762c5a795c48d68a3180fa6da *man/opms_problems.Rd
4a9aa8b12df4d30111e851a63bac0356 *man/other_slots.Rd
d0694249e77c64931fea99faad2a1745 *man/param_names.Rd
fe4336fd27693610fde6064c6eb35f16 *man/pe_and_ci.boot.Rd
34cfe8f40f1096f8ad5533bfba6ffc40 *man/phylo_char_mat.Rd
36380132ead63749e2e5845640b77cc1 *man/phylo_data.Rd
610b3d0f5fbdcce92ec3d21674064f2c *man/phylo_footer.Rd
549531c5f782f5d6368ce486a2e95f61 *man/phylo_header.Rd
9b515f5cb1164a278f5900cc7d3238da *man/pick_from.Rd
275bf65d438ba619e315c88e8e5cb731 *man/plate_type.Rd
a9d39acf35cdf6f1c5f5ff8fa812ea13 *man/plates.Rd
201a45f06877b07946d5e2fca8f00daa *man/plus-commaOPM-plusOPMS.Rd
9f8620ec1ba3ce7e04d53a541537f88b *man/plus-commaOPM-pluslist.Rd
05fdbcd3d82d3c53857c29fb400d623c *man/plus-commaOPMS-plusOPM.Rd
dfee6aac81e477bf41d96d8d4a8bbb4b *man/plus-commaOPMS-plusOPMS.Rd
2043d6a9a7c7f87ffc86d07bd2291eb1 *man/plus-commaOPMS-pluslist.Rd
585f6e29d62cc23c261cc759ffeeea3e *man/plus.Rd
c6214e5cda2b49729be4f0cf01403ae2 *man/position.Rd
8f7e113936e90abdd846e7ccaf114bd5 *man/process_io.Rd
0d8ddab4f670601a0b5f9641a2eff629 *man/read_new_opm.Rd
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0d79dac06de527aba9277778f0d1156c *man/read_opm_yaml.Rd
7cca50d8ae4efb1471cffc8611dd9c74 *man/read_single_opm.Rd
edafa8996b8ce4bd749aa6a2a1185098 *man/repair_na_strings-commacharacter.Rd
7fb00483e1e1b69fbb695bb18abb957a *man/repair_na_strings.Rd
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a528773d42faeda140fd968bd4e998a3 *man/safe_labels.Rd
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e7becdb6aa9ecafbc4465fbf11a9f12a *man/select_colors.Rd
61d26d41ff675dcc889f1d95f1153890 *man/setup_time.Rd
0d9fa145fb0f40a84b45dcac92c78c2e *man/split_files.Rd
c3e311cda2562733bfdec4ac30e0ac4c *man/summary-commaOPMS.Rd
7e4401987f4135833433f78bd513171e *man/summary.Rd
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32204a6cc41f04da261e42d47a5fece7 *man/to_grofit_data.Rd
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18f8d92a4517287667dafe6ef10fbe03 *man/to_metadata.Rd
aa1a1bf61e02ac0443cf7becd15e54cf *man/to_opm_list.Rd
6c243adf546e96ff574b1cd2be66030f *man/to_yaml.Rd
91bad91d599af04fc5fa9f4efcea4e06 *man/traverse.Rd
43693d59cc43ab10f521cdc6ad00bb58 *man/trim_string.Rd
6692c4cd07a05ccceab7e9f68a394f19 *man/try_opms.Rd
49c5b2a4ba8602d31608c13814f1cddc *man/vaas_1.Rd
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cf6274ac274be0e8d76641389f4e18e5 *man/well.Rd
bd2017e14793838f8e1d1af902df8fc4 *man/well_to_substrate.Rd
803aeca2e571de67a6f2eefe063e6418 *man/wells.Rd
a051bddeee73df0426d66f3b5edf9bbe *man/xy_plot-commaOPMS.Rd
af524744e826af58f893b6ca72f7dc85 *man/xy_plot.Rd
4df456a155bdb96fc8f6aa136bd92b4a *tests/run-all.R
