da060d82b9f8aa3749fb732bcb0c3c46 *ChangeLog
b0dc2a437082f67f567209652ba1f5e1 *DESCRIPTION
95ca487ef1755623cf245f71fda39473 *NAMESPACE
21dc98ed26319583579426c83a77a8a0 *R/aliscore.R
6ca57969d75de5cd243068a1eded4c7f *R/code.simple.gaps.R
0b213a666b24fd42e840345955234dd8 *R/collapseUnsupportedEdges.R
a20800130d6fe52ea7d9c175027a3e3a *R/deleteEmptyCells.R
4eff13ec3004276db4f41996e5f1c3dd *R/deleteGaps.R
3b9fda3f3f1bfe2fff6dcd84f369d530 *R/descendants.R
93310a46a9e9884ee1b3a97b555b12b6 *R/extractBEASTstats.R
09756f52ea9c8acfe48031c792d0bd6b *R/extractMRBAYESstats.R
f0b5c27477a5b3154752e2e0968c164b *R/fixNodes.R
667c567730f7de9cdf46162cc9bb194e *R/gblocks.R
2898f92133bd16bb7df8ed9d31a920a1 *R/mafft.R
0ad07da376ae1625e1f85939c8d04e11 *R/mrbayes.R
83a15c6f6002d7399e76cd7d8f5f82a5 *R/mrbayes.mixed.R
3844ef63fa0c6a52bb18d10aa839bd45 *R/multistateMCMC.R
17d3e2f7054bef37354632dd3ce9ceae *R/multistateML.R
7fa3a3a001fe789f96cb7a96fa32e398 *R/noi.R
2500947400f6ca8c269411b78c223733 *R/phylo2mafft.R
7cea6a6953fe0faedb5bbccdc44a417b *R/pis.R
44a319bbe89cd227d2439b8d7d72863a *R/prank.R
8137903e705f164806379f483c2d6ad5 *R/raxml.R
d6174f77769762e91d0d6e92c3a75a16 *R/raxml.partitions.R
00691b6a12cd14504122db33d9715c83 *R/rbeauti.R
ffd2db46f7ebca15dccc0ddfb5451c42 *R/rbeauti.taxonset.R
53ef6b99392845d1c6f1191914c49efb *R/read.beast.R
1e70dbe21736facefe6afb2e23090018 *R/read.beast.table.R
19ff6eb642908ad40ab6d698ff05549a *R/read.fas.R
b9fd30ed826d9d22772c3d4e04cce87b *R/read.mrbayes.R
7f5f5929751b0441bb9f2894b0852ede *R/read.nex.R
809d1325cb6abc40bdae4ead20e32390 *R/read.phy.R
d0510903f1a5296e483fc7dd9d48a15d *R/read.starbeast.R
145e5627ab61b1e96d9d6c64ffca2bf3 *R/read.xml.R
fc101d7698af1967ab06a2ae0ee3f7f4 *R/sister.R
bbbc13fc0494ae786ebbc54627923fb5 *R/terminal.clades.R
70a41eeb1fe3f930c0fed2416b95ac13 *R/tipHeights.R
d3d84db00c844c466826226f9df5969b *R/traitRate.R
76e038bba90acb1b04b0848ae545d629 *R/traitRateOutput.R
33a845fce17eee9b104b21209c3628e6 *R/traitRateParams.R
c68ef26b4bd415f2b70ec7044bdb4e24 *R/trimEnds.R
e623540dcce5a975248a30aefdf27c56 *R/unresolve.clade.R
b303d2623933e288cc4b90d7f252ddd1 *R/write.fas.R
7642e489a6ecfd973535c0b3618eca70 *R/write.nex.R
0bf86f0762b44e46ad00315232bc8d44 *R/write.partitioned.nex.R
5e8a57005c47d16ce3b29d61f8b20f1c *R/write.phy.R
6c7bb9689c366e4022a845fb8ef23743 *TODO
5388be92bb19ee166f3d2f21083ad90e *data/ips.16S.rda
14ff43da4b98d0ac47cf31cca6e96470 *data/ips.28S.rda
c1617058656d446b94905149ceb271e0 *data/ips.cox1.rda
08263682cbcb59d152107bba8287faf8 *data/ips.tree.rda
b54cd3bcf91bdeb8f652068f974ae7eb *inst/CITATION
38319e7fe4582805eba9503dd8f7d36a *man/aliscore.Rd
9f2ef108858922d8cf8538394745bde4 *man/code.simple.gaps.Rd
2427d2bfff2cb582fa6543ac08603a4a *man/collapseUnsupportedEdges.Rd
d8f556ca1e0680439848190c3251adca *man/deleteEmptyCells.Rd
85030805bdf71dc7fdceed7caeca1222 *man/deleteGaps.Rd
e6d6a771af76f7a89f06c5aa99c848de *man/descendants.Rd
6f66dc17f37bb93ae58f1a2a58690a02 *man/fixNodes.Rd
772113d345318d656f3cf1e69772af8f *man/gblocks.Rd
b13b058a2a473c2ac0170e6a28cc3a7c *man/ips-internal.Rd
6a7eb7479d1462a8ac1f8ced152bf544 *man/ips-package.Rd
43ce53758be732a66933298dee693571 *man/ips.16S.Rd
1ab01bbcc19d95a3348835928470306d *man/ips.28S.Rd
802c43d5b8f740182cd2b2d73eec375e *man/ips.cox1.Rd
8bda7f2fa01c084d1ce58acf9e4f22b9 *man/ips.tree.Rd
4ca2e701b61aa6500b5646977becd193 *man/mafft.Rd
57339a5380abe92c9d3ab75599080433 *man/mrbayes.Rd
f008ff8f4974e94d307f2b44a3ea0b5b *man/multistate.Rd
928232c66ce858460ac4a72d27ffcc21 *man/noi.Rd
878d2062c5030c242b820b48382c714c *man/pis.Rd
d8a29e04d5087a904d7aaaf50409d3f7 *man/prank.Rd
6685c4166e7561e1aebfd036cd1712d0 *man/raxml.Rd
aeb036b30279dbdebd89ed419bd833c0 *man/raxml.partitions.Rd
359b4c5c92a05d2f78690a3e1b08e942 *man/rbeauti.Rd
43fabc7fe9ecc7eb432f27a8071241b9 *man/read.beast.Rd
784715fa25769650751efea5bde7dfa0 *man/read.beast.table.Rd
ece9382ce13765a77be767b08f0a8d7d *man/read.fas.Rd
5f248de19633de580cb04aa927b6caf0 *man/sister.Rd
126f1a2480f1902e9075e099a7cbbd1d *man/tipHeights.Rd
070dd9e0d2953e67b062dca9cbdf2c59 *man/traitRate.Rd
8fed10e30fe8302fab39640ba0e62bec *man/trimEnds.Rd
3977971ee3a363b7064d1683afbe8bdb *man/write.fas.Rd
3e0fc3384a42e86365b88df57f6a50b5 *man/write.partitioned.nex.Rd
