83ffca31195e9816515c298b5954b251 *DESCRIPTION
c57a64f551e73a6fa4749ae29f3b8e64 *NAMESPACE
dabeb2488c5e55ccba8d1dca87ba8c81 *NEWS.md
851c421821e90e7fcbc271878f6bd4e3 *R/compare_dynamics.R
fe4f7ec7e88642c17907774adeb5d598 *R/distance.R
4db693b958e9ec7659f86bba99820160 *R/greatR-package.R
2f4227fb9a1711771b6ad8af0df6821e *R/optimisation.R
dfa65c823f45ea5274416d82e48253f0 *R/plots.R
cf050dc839c75e640a5f8bf8fd7eb756 *R/process_data.R
7cba0ad69a61843132e404c5ed438213 *R/register.R
4af15a3679b60cb8b27b648c47da4d5f *R/stretch_and_shift.R
b6ed7d2fb7229a664270822b3eb8b773 *R/summary.R
34574a5ac48c21569541845f32f44f21 *R/utils-calcs.R
b8a7af1dd0c58a426a8cadd004a09237 *R/utils-data-table.R
ff17b7db1c231d7c0a38af7bdb714a03 *R/utils.R
ff0526f7362a0dff80d22e8d786e0c3a *README.md
8a22ae68bc7a8b302d9316ab42f12239 *build/vignette.rds
e37c1c5d68a31f0791c330620071c068 *inst/doc/data-requirement.R
7bc7c5de96088db43260baddfc2f121c *inst/doc/data-requirement.Rmd
db48bc1548d8b9ae7c74e8d69461adc4 *inst/doc/data-requirement.html
8dddb7408e91a452f21838a82f055481 *inst/doc/register-data-manually.R
a755b89e24914b731414facceda036b7 *inst/doc/register-data-manually.Rmd
5d0f8a0e18d141fa426f829d7d6eb3cd *inst/doc/register-data-manually.html
04f6a93281ecb9dc9b449a51ee8dff32 *inst/doc/register-data.R
92a3e81c7dd13221a2d2b036fdd1fed5 *inst/doc/register-data.Rmd
54c6467392694cf6fb0517d607a39b44 *inst/doc/register-data.html
9a5e18dd12623628a69254e1efbe7b92 *inst/doc/visualise-results.R
8b4b2abdf45eda354872bc9f11600eea *inst/doc/visualise-results.Rmd
e4604e64daf5bb45989ea4cce6b611b7 *inst/doc/visualise-results.html
f4a4360e0c27d32462e4460f73962f5d *inst/extdata/brapa_arabidopsis_all_replicates.csv
c5fe2634b4da424d11e0bdc7e33de265 *inst/extdata/brapa_arabidopsis_registration.rds
dfb2324dfa561fd1671f138f05d683a6 *inst/extdata/sample_data/arabidopsis_expression.rds
025aac55fc6afb73605b89ff39705264 *inst/extdata/sample_data/arabidopsis_expression_5genes.rds
a5bd04b77db0c00d93731a4d0a92c9dc *inst/extdata/sample_data/brassica_rapa_expression.rds
a834436f45fecc809121efa5e94c5d83 *inst/extdata/sample_data/brassica_rapa_expression_5genes.rds
b510e99e4e4362551fcd0a0deda08f42 *inst/extdata/sample_data/id_table.rds
a10aba62c9873a69ae48b0466a90bdc5 *inst/extdata/sample_data/id_table_5genes.rds
00da7ac4fe703cf2aa8d094cca3fc423 *man/calculate_distance.Rd
17566582143132a8cf160e784ef878ca *man/figures/greatR_workflow.png
dc28c4e5541b71bd9652e8719b4d795e *man/figures/logo.png
3979195a2ad5a25c2d5249118a0ecba0 *man/get_approximate_stretch.Rd
05132fa4c52491cbd294a42bc8bdcb0b *man/plot_heatmap.Rd
57d56378e9c01b256d36cfc1fbefb0db *man/plot_registration_results.Rd
98cba9f35707fa2dbc0737064c39eeed *man/register.Rd
4c1cd1c157ddd32cebd389465a24729d *man/summarise_registration.Rd
5a3acb10ff9f72f7e31909b6c6609f10 *tests/testthat.R
cbaf8b2a39a22247bdd19ccd5ed981ee *tests/testthat/test-dynamics.R
0d932ca5792e118821c4a0915e93c9c5 *tests/testthat/test-optimisation.R
8f19d572f1b168465057bfb2d86c2b9d *tests/testthat/test-registration.R
461de031aab65981279b4f458565f42a *tests/testthat/test-results.R
d04e2ee27b33c86648a9ce552710efc1 *tests/testthat/test-utils-calcs.R
8a6a2c1b405fdf1831453976310b81e0 *tests/testthat/test-utils.R
7bc7c5de96088db43260baddfc2f121c *vignettes/data-requirement.Rmd
e6f2b21d455a886b8782a6ff6e0f2eac *vignettes/figures/01_registration_opt_default.png
e7f767ee137f9006b708139f64351d6b *vignettes/figures/02_registration_without_opt.png
0a402ce546cba5e6c0d720e8c25a33e0 *vignettes/figures/all_data_illustration.jpg
f2bdfdc050424100d1cca3a0faa8c2e8 *vignettes/figures/all_data_illustration_new.png
1398bd39cea37efd437d2e1f6e5aeb68 *vignettes/figures/mean_data_illustration.jpg
75843b9da7510438df1ed89c73fb3b25 *vignettes/figures/optimisation_workflow_with_initialisation.png
fd07e0cad43367f90bf6a95fcfacfedc *vignettes/figures/optimisation_workflow_without_initialisation.png
74525183b54aff5b6299f57bc0e809b3 *vignettes/figures/prepare_data.png
7f3f752623632c22b4d5f63b842dcf9a *vignettes/figures/reg_results_with_boundary_init.png
dedcdb5a9dd72633b9e4a26e83c47ebf *vignettes/figures/reg_results_without_boundary_init.png
30c308cfbc65cfce09b6cb5a98090fb3 *vignettes/figures/registration_process.png
0e0682e80971cefe3d9106feafa97604 *vignettes/figures/visualisation_process.png
a755b89e24914b731414facceda036b7 *vignettes/register-data-manually.Rmd
92a3e81c7dd13221a2d2b036fdd1fed5 *vignettes/register-data.Rmd
8b4b2abdf45eda354872bc9f11600eea *vignettes/visualise-results.Rmd
