36708a6fe44888120e7593661f6d7e79 *ChangeLog
11eaf3131caa8f1ad541a8ba2419b012 *DESCRIPTION
628c4bca1dc707b6c80d35c8408d9ab5 *NAMESPACE
0695d95ade702024b64f8bd1c983e3d1 *R/annotatedTreeReader.R
d606c1301a254c19d5302347a0b02686 *R/auxClasses.R
764015498b8e7e51d4c1735d5797ca2d *R/dna2uniqSequences.R
037fe236fb61100507ca09341acf586a *R/epibase.R
84d17dfe35a04861c5bead6c380c1b9f *R/generics.R
e38ab3737b83dfcba98ba683f134633b *R/get.incidence.R
4ac1de6eb71a70812941954000671ec0 *R/importFromJSON.R
26ca02862f80f365ac77d7f18ab9c1dd *R/make.attributes.R
0eda1b77762e80a4cd783c1fb37069ba *R/make.phylo.R
e8a0162f724ec009b18b4d2327ea54f7 *R/obkContacts.R
75bd426ac175e03aa078aa0743a976fc *R/obkData.R
1a326c0a1098b670eaeba6e19ef0beac *R/obkData_Accessors.R
6044562a1d3d7d2ed2103dd4aeb1cb64 *R/obkData_basics.R
a34cf3651144fdee12996b97359f794b *R/obkSequences.R
03c4967464a40a3f26149ac6bae97c99 *R/phylo2ggphy.R
c2c89c1322a546c250565154a825c21b *R/plot.R
c72bab8606e56e851566517f76120702 *R/plotGeo.R
887f1e91475818f7abb888a28ad3de67 *R/plotIndividualTimeline.R
ec8e1ceb672fe65fb05019ab741b7ad4 *R/plotggMST.R
7ff8d9498482abb7d4d5d43625d5488e *R/plotggphy.R
0987689445f8162e9c2da03433a81c4e *R/simuEpi.R
a891901f9fdf7c592cf900529f93bfb8 *R/subset.R
49bba3246fcdd5c48770804ad6d0f3c9 *R/uniqSequences.R
97d2d8fdbc122d967aa514e18bf939c3 *R/utils.R
35f0adc4c7e5a30faf15c62e7925a112 *R/zzz.R
2b6623194d1ffde156d3558ec6da3c24 *build/vignette.rds
ca3aafec874657a79e34698a2946ee87 *data/FluH1N1pdm2009.RData
1959058b4c25b67d069445e9e27fc86e *data/HorseFlu.RData
d88a03ae90225496b453890229c15b4b *data/HorseFluRaw.RData
e0204ef62bd1e84c30b35d26dc217e5c *data/ToyOutbreak.RData
c6710c22d4845b269e6038fdf01603c7 *data/ToyOutbreakRaw.RData
2a2015801db01f06cb86b878140f81bd *inst/doc/epibase.R
493bc910dce876a8f8ed9185a636c226 *inst/doc/epibase.Rnw
654e5f41aeb76c75b46857097548e60a *inst/doc/epibase.pdf
1470607bdf124ecb2a9737e6eff07ca8 *inst/files/BEAST-expl.nex
97ad0f41cba29af2dc18879341eb6dfa *man/FluH1N1pdm2009.Rd
657b5b2a94feea3299516e0c1d9b5f77 *man/HorseFlu.Rd
a294a52f8e31d68c5ebf1b7ec65e42e9 *man/HorseFluRaw.Rd
60e5ea76c7f26c63e0349510a1a94c54 *man/ToyOutbreak.Rd
e62d384db1f3eeab8ec67d4cec2883b5 *man/ToyOutbreakRaw.Rd
ac61c445d4b1833c2874a4f933233b87 *man/annotatedTreeReader.Rd
a855d71baa25c4ed7fd816f927d9b3c9 *man/auxClasses.Rd
fe7505c623ad4ba14e99aeee34ef39f8 *man/dna2uniqSequences.Rd
55e6536b0dbcf88361f35a6a30bf9a2f *man/epibase.package.Rd
8e090c17fdd2fd7d1b0065fe6a786b65 *man/get.data.Rd
1f35bfec8d991e15780f7b92ffdd5160 *man/get.dates.Rd
aa800c2322be67d08fc307acc8c23d92 *man/get.individuals.Rd
932953fccccc4afa7c26970a2ac2bac4 *man/importFromJSON.Rd
3373beda0892ae4e5883d1d2e33885a0 *man/make.attributes.Rd
6b2d913154904e264b8d5f1687739587 *man/make.phylo.Rd
a9d1309cc5391955f78b62b4976c0ee8 *man/obkContacts.Rd
63b39f3c3d0da9a80899fc3dfa65e20c *man/obkData.Rd
fc5426844a6e81d3ca23e178249b7d3b *man/obkDataPlot.Rd
da7e4eb5c98f68d3464a98c4a905c712 *man/obkSequences.Rd
01caee3e5b631405ad752a7f89ef5dd0 *man/phylo2ggphy.Rd
2ab93d85684ddc463415391997840d87 *man/phylofromtranstree.Rd
d7ed6790669aef897a2b43f3f9360e38 *man/plotEpi.Rd
9f7c258f8b07862991e7b36aff10e660 *man/plotGeo.Rd
b23317e3f1a74f62f2810032985ca475 *man/plotIndividualTimeline.Rd
ebdd01419d6c9fe1a8330319f27a0133 *man/plotggMST.Rd
597a9119977bff837fcafdef2bbab96d *man/plotggphy.Rd
a01be53e77d67ecf41a82189a8ea44ef *man/simuEpi.Rd
7dd0765a52cea6e1cb64c152afa079d0 *man/subset.Rd
2351185c150a7c2705a69705877ce8ff *man/uniqSequences.Rd
493bc910dce876a8f8ed9185a636c226 *vignettes/epibase.Rnw
7ce7092dce7d47eb07e8a910667fbb80 *vignettes/figs/epibase-dynNet.pdf
ff02b72983ae9bab1d5c99a36471078a *vignettes/figs/epibase-graphstat.pdf
3d586d386d84adc3aeee0242ce9c5676 *vignettes/figs/epibase-out_width____7/textwidth_.pdf
cec235caba76d0d561dabf06011901ba *vignettes/figs/epibase-out_width____8/textwidth_.pdf
e698b2fe71d37fb1afbb9a6afb328b01 *vignettes/figs/epibase-pdh1n1.png
86b1b241f515e5d45840eb387c9024c8 *vignettes/figs/epibase-pdh1n1tree1.pdf
bdb8e5f88d19a5018914b95bf4414808 *vignettes/figs/epibase-pdh1n1tree2.pdf
58c68f57b74472f98679584dea7be17c *vignettes/figs/epibase-pdh1n1tree3.pdf
90c0deff1004a90876603e9ff1f06b58 *vignettes/figs/epibase-plotfirst20.pdf
da947601626c3ac65b10681d6922cb58 *vignettes/figs/epibase-plotgeo1.png
e1cd46daa3dae314c1022f4d1a409815 *vignettes/figs/epibase-plotmst1.pdf
ac8cf19958a2b3c84e72b06fa7ca7459 *vignettes/figs/epibase-plottime1.pdf
4c52d0b63ce3fb659b4a09b2019f5c30 *vignettes/figs/epibase-tree1.pdf
8ba083e23a898e1c2ec0c2b776e10943 *vignettes/figs/epibase-unnamed-chunk-45.pdf
c8470d166046630a10841253b73e460b *vignettes/figs/epibase-unnamed-chunk-46.pdf
9758631f8239576d74a71c7fb5c15b89 *vignettes/figs/epibase-unnamed-chunk-47.pdf
c07d7a441deffecc5157cf9ccd04afac *vignettes/figs/epibase-unnamed-chunk-471.pdf
007658e542288021b6855e0f28554f74 *vignettes/figs/epibase-unnamed-chunk-472.pdf
0d811bff14cbdf8b27777b90eac2bcea *vignettes/figs/epibase-unnamed-chunk-48.pdf
22e7f9e7ee065ec32c2e5b6b4a0df7cf *vignettes/figs/epibase-unnamed-chunk-49.pdf
fec84e799decce24d7b60fe5beda73b7 *vignettes/figs/epibase-unnamed-chunk-50.pdf
f264b45ff460cb50139e7f05af49b6c7 *vignettes/figs/epibase-unnamed-chunk-51.pdf
fc7045bc5c0d77558a106d0e18d39d2c *vignettes/figs/epibase-unnamed-chunk-52.pdf
4955bfda5053c6c5fe27f877c73bafa3 *vignettes/figs/epibase-unnamed-chunk-53.pdf
1247563c5f8cfcb95d530336b81e8798 *vignettes/figs/epibase-unnamed-chunk-53.png
120cc1dc5c2681fedb6d7c45ee1cd7b5 *vignettes/figs/epibase-unnamed-chunk-54.pdf
1247563c5f8cfcb95d530336b81e8798 *vignettes/figs/epibase-unnamed-chunk-54.png
c36c37a2f8ea22732f4def37b1399a62 *vignettes/figs/epibase-unnamed-chunk-55.pdf
d628cff2418a4b21d0d6940ff880d98e *vignettes/figs/epibase-unnamed-chunk-55.png
67b8a82b32f4575f1ad346f868bf349c *vignettes/figs/epibase-unnamed-chunk-56.pdf
1077d44e8f1210877bfd6edb9ea4c3b8 *vignettes/figs/epibase-unnamed-chunk-57.pdf
38ccd7fd24e22644ee81d8b67f65dd36 *vignettes/figs/epibase-unnamed-chunk-58.pdf
72ee5f34b03c38b3fa264abb1c57563d *vignettes/figs/epibase-unnamed-chunk-59.pdf
