Package: diem
Title: Debris-Containing Droplet Identification using EM
Version: 1.0
Date: 2019-11-05
Authors@R: c(person(given = "Marcus",
            family = "Alvarez", 
            role = c("aut", "cre"),
            email = "malvarez@mednet.ucla.edu"), 
        person(given = "Elior", 
            family = "Rahmani", 
            role = "aut", 
            email = "elior.rahmani@gmail.com"))
Description: Identification of debris-containing droplets 
        from a droplet-based single cell/nucleus RNA-seq. 'diem' uses 
        the expression profile of background RNA droplets, followed 
        by expectation maximization (EM), to assign candidates as 
        debris or nuclei. See Alvarez M, Rahmani E, et al (2019) 
        <doi:10.1101/786285> for details.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Depends: R (>= 3.5.0), methods
LinkingTo: Rcpp, RcppEigen
Imports: ggplot2, Matrix, scales, dbscan, igraph, utils, stats
Suggests: Seurat (>= 3.0.0), testthat, knitr, rmarkdown
VignetteBuilder: knitr
URL: https://www.biorxiv.org/content/10.1101/786285v2
BugReports: https://github.com/marcalva/diem/issues
NeedsCompilation: yes
Packaged: 2019-11-13 01:35:39 UTC; malvarez
Author: Marcus Alvarez [aut, cre],
  Elior Rahmani [aut]
Maintainer: Marcus Alvarez <malvarez@mednet.ucla.edu>
Repository: CRAN
Date/Publication: 2019-11-15 17:30:03 UTC
