8eb428935693372f14c437a656a31b6d *DESCRIPTION
00f0dd51c779fad9dd2be86820d69026 *NAMESPACE
e49ade9dc26f9483c736d0785c8e8c21 *R/AllClasses.R
0fd69122a3af4ea427c45afda34df79b *R/AllGenerics.R
3dbd9a14bca85e12c9d346442a8c323a *R/Constructors.R
ca7224be4542d03f96e0d70fa1790152 *R/DEMICel-methods.R
e5b01b714fb4b9246430f77c76291f04 *R/DEMIClust-methods.R
9b77c71142852d58beb26e488fd65260 *R/DEMIDiff-methods.R
3cc98c932a20299997e495e8db4e228b *R/DEMIExperiment-methods.R
5a0b54b61a3186f7294b479543b33b3b *R/DEMIGroup-methods.R
6b798415a4bd6ee3217217dae576c30c *R/DEMIResult-methods.R
706843eb1f7334574a1ecf1b3c81d1e6 *R/cluster-methods.R
88ec013c8a9f8066c8d88f1277c47d1f *R/custom-methods.R
dc9f846ff1926d9f6ba0fce884d8e89e *R/cytoband-methods.R
7469f5dddbf128ade582e527e189ebb8 *R/diffexp-methods.R
fc59dbed6adec4ccd9f13eecb9e5bca9 *R/messages.R
36a1752877e136189e4bfd1609bd20c9 *R/normalization-methods.R
7ae610a3e6d5cc70367bad267b20f71b *R/other-methods.R
8d66ee4a6ffd20b49a082e5179a8ee75 *R/zzz.R
18464cff87bc71c4ef4113d29c58157c *inst/doc/demi.R
4f70ffaf15b30bdea39eb971c8130046 *inst/doc/demi.Rnw
53502c2e2602bacc29883de390ebfec8 *inst/doc/demi.pdf
1c4fdc4d59abfff50f1c54bac56412e6 *man/DEMICel-class.Rd
522dcd63eab2333fcb7ecc54aa394fab *man/DEMICel-methods.Rd
78749187893e032e300993e5a6e1a24b *man/DEMIClust-class.Rd
bbaaf9303b3f4a4110826dc4c8a55d63 *man/DEMIClust-methods.Rd
c2c962353ae3724046b2657891785aa4 *man/DEMIDiff-class.Rd
098b2663891f7350ffce96c8184e6992 *man/DEMIDiff-methods.Rd
bd4ce19d7916782ee1a0cff050d60bdd *man/DEMIExperiment-class.Rd
8d9e5731aa0c0fc9e938ded918ba1369 *man/DEMIExperiment-methods.Rd
451d18d1920800d13ab704b64fa9972d *man/DEMIGroup-class.Rd
1eede7217c6ee18a5f83135c8648d583 *man/DEMIGroup-methods.Rd
e479dc5d7e5d3d184d35b25a8b4a0cec *man/DEMIMessages.Rd
f7ac65bdc2f2275f2d112e2a93049280 *man/DEMIPathway-methods.Rd
2a58726de45b9ab23c5551840e8eebc5 *man/DEMIResult-class.Rd
5e4fc3eb81993287537825dcdd05e7ff *man/DEMIWrap-methods.Rd
e5b6551b9a88e57ed61c3987978b0e99 *man/addCustomTargets-methods.Rd
289316c835f798a1a08b69a26c28a31b *man/addCytoband-methods.Rd
2e3c3a075f3948be6a293f5ae1e32639 *man/adjust4maxprobes-methods.Rd
d4cc1d5f640dad845b6c3e6ddadb1e13 *man/attachResult-methods.Rd
d22baa2b55923b692b4cad2d40d2c2fa *man/calcHypergeoExon-methods.Rd
9cd86a4c4a0c91ad97acf63b78e61fdb *man/calcHypergeoProb-methods.Rd
de12a8ba0b766f20ebbdff7e91602fc8 *man/celMatrixNormalize-methods.Rd
7e560bcaf4d101bee145f9bb24281617 *man/check4probe-methods.Rd
4c3e0d04a510f029e9f01ec5303da576 *man/check4target-methods.Rd
99387ae8944c3e70e35558afaa2e8ae1 *man/checkDEMIExperiment_analysis.Rd
dcbfdc306a2c180d1e0f13651f4ade64 *man/checkDEMIExperiment_celpath.Rd
cd69ca57ec478113aec195956ed736da *man/checkDEMIExperiment_experiment.Rd
ad5d3068ae4a822e27cc851f575a4ab7 *man/checkDEMIExperiment_maxprobes.Rd
99e58866e9d9e7f2a7785beef9605692 *man/checkDEMIExperiment_maxtargets.Rd
7bbc52e1d52929f031ff6a7463c3c1cf *man/checkDEMIExperiment_normalization.Rd
4b1b39fe371e0877b8bfc9eb2e2b5921 *man/checkDEMIExperiment_pmsize.Rd
33048962fefe156306d6e31e45e7aaf0 *man/cleanorganismname-methods.Rd
4dade2c3d7624ddf10eaa44e2de1b418 *man/cluster-methods.Rd
a48e293415ebfb85f2acc8301a33134d *man/createGroup-methods.Rd
14f8b6d74d2969eb12e522d8eaf15c8c *man/customObject-methods.Rd
5c0784f8ec559f31e2a3e2d1d1336e87 *man/demi.comp.test-methods.Rd
1cc90e23cea84747a322e9b967692611 *man/demi.t.test-methods.Rd
ce0ef11d955b06ade8c60451cddeba6f *man/demi.wilcox.test-methods.Rd
d4131b12ce1c74f8899f1ca6fd088f8c *man/demi.wilcox.test.fast-methods.Rd
0f4a1bad8367a7ebb66bf70ee297bfc7 *man/demiequal-methods.Rd
c84eaa37119a01267601d2e4f296188d *man/demisummary-methods.Rd
eae3a8055da81d29b05bde0a12124e80 *man/diffSpliceScore-methods.Rd
12b6b9452b825c0126d61b95c06aeb6e *man/diffexp-methods.Rd
d7995990c861fe7939650751b8082c70 *man/findCytoband-methods.Rd
5e9994ce2045ff7303a5617edb7d948d *man/getAlignment-methods.Rd
1e459b13ba34f58fc286ed78616bda29 *man/getAnalysis-methods.Rd
f824efc7805dd9f51eadc02a9fecb5bc *man/getAnnotation-methods.Rd
ab71e442cbd61f83782f277f8ffafc4e *man/getArraytype-methods.Rd
a5ff02fe2f194a279cd4216670766537 *man/getCelMatrix-methods.Rd
c148aece4e862a8c5ba08efcfb09a542 *man/getCelpath-methods.Rd
9676a8f9f932db41cc1adf2e0632bd30 *man/getClustMethod-methods.Rd
da179033c24d3aed38aa8ae821496cd3 *man/getCluster-methods.Rd
a986244917a241264c38d5d54895cccd *man/getCutoffPvalue-methods.Rd
fba0eb2f54383bec3ddac85c9a5cf6a8 *man/getCytoband-methods.Rd
c416a45914aa12984a53902e7ada7ab4 *man/getDEMIClust-methods.Rd
6ec3bd961e0cce719d77733774f01732 *man/getExperiment-methods.Rd
658143dd82c1617dd305739cdeb9ff76 *man/getGroup-methods.Rd
259ce7d43197cb425fa9f37ac7a73a6c *man/getGroupA-methods.Rd
cdfb0a6e723dfabda9b521ea9c86d303 *man/getGroupB-methods.Rd
09c5cc53f5a3b5387e3db78478b2ba22 *man/getGroupNames-methods.Rd
ec37b499fa4dd7fe378e9fec0fa5d53a *man/getIndexA-methods.Rd
95ff9db32133ff3ea3dcc34986824c24 *man/getIndexB-methods.Rd
5a0f7dfb7362d456fc48f5e8b02efdab *man/getMaxprobes-methods.Rd
9a546f34a23c58e18d624b443079d0e8 *man/getMaxtargets-methods.Rd
9407255b971846d188d9c28e0ebb386b *man/getName-methods.Rd
06fa1e020161417b4db1c021f9c2dd49 *man/getNormMatrix-methods.Rd
aa6642ec1399f2cb79c0c7c1a5da375a *man/getOrganism-methods.Rd
041d4e826d5e0acba7a1c59a1b6394e6 *man/getPathway-methods.Rd
785c9cd8c9337d4526e829859ffbddbe *man/getProbeLevel-methods.Rd
89532918de776e53c020d36311f4a691 *man/getResult-methods.Rd
438dc1099e3112acebafa83d326a597f *man/getResultTable-methods.Rd
a4ab2664d5943de86e51ee364959e4de *man/getTargetAnnotation-methods.Rd
e171297d5a5fbe7a7b1275eba18d0046 *man/getTargetProbes-methods.Rd
32f26f92bb5753daded2e0d1d4794833 *man/initialize.DEMICel.Rd
789450f8b59e1e5a896204c49a0664b2 *man/initialize.DEMIClust.Rd
ae465b7741f4269f78e7ee9ab398bf97 *man/initialize.DEMIDiff.Rd
d7329e08ac31e2cd0ceb49d6115ec078 *man/initialize.DEMIExperiment.Rd
ee00cba04ace7ac5e2c15aad8242c545 *man/initialize.DEMIGroup.Rd
9befaee91418f3525cf9c023a5fb3f8b *man/initialize.DEMIResult.Rd
0ae40eca7668bb7f4d9544e1f5698421 *man/loadAnnotation-methods.Rd
4062bfb6e956ba63d7b7dec1a70f952b *man/loadBlat-methods.Rd
e58c5a416e06bae347809ba72988006d *man/loadCel-methods.Rd
4192df22682a1f54eb506bfa4c0530da *man/loadCytoband-methods.Rd
d2c29146b04a512a73f3d702c1400892 *man/loadDEMILibrary-methods.Rd
6be4a291f008c639731749644ef5c619 *man/loadPathway-methods.Rd
8e18f1d7603dac4b3297901463831a30 *man/makeDEMIResultsTable-methods.Rd
c6653e8e3420bd89bc54dd5e5aa5ef9d *man/makeUCSCLink-methods.Rd
2373dc9dab03af69c90f0d51c6277283 *man/matchExonGene-methods.Rd
4cb39b31835ae9fb53601c2a7c6ba4a8 *man/norm.quantile-methods.Rd
d63ee86768d6004f07c966a1c642baeb *man/norm.rrank-methods.Rd
49d0b053110ee80de021082109c1a556 *man/probe.levels-methods.Rd
d6a9b1f1b84145ef4b43d3e96eb48dae *man/probe.plot-methods.Rd
da045b64db3f50d853b5c278e08c1c6d *man/totalMatches_all-methods.Rd
599cc2b500bcaf9703069b065cb4892e *man/totalMatches_cluster-methods.Rd
b782ced682cb113c16ac8cdca4e07cc3 *man/validDEMIClust.Rd
6f3f87c439df47a292d80adc440547c6 *man/validDEMIExperiment.Rd
3d1ce9f79518132445991d158323ec9e *man/wprob-methods.Rd
2c4a57de4ae882985871c8b35414ad14 *vignettes/MAOB_probe_levels.pdf
0219e5436c0acac4738c6f932827765b *vignettes/MAOB_probe_plot.pdf
4f70ffaf15b30bdea39eb971c8130046 *vignettes/demi.Rnw
4e9301a4d643a699d28525ff3d091c6b *vignettes/references.bib
