5df1df1934070c7cddea6443799910ef *DESCRIPTION
081a5e6c510588496cb1a637001045c8 *NAMESPACE
0a2947df009c483dd4de47416a62196a *R/RcppExports.R
98ef2f1661dcab366a0fb404070e507e *R/Viterbi.R
44ca62effef75a2bdbd25976d43a1bae *R/align.R
7352a4a8b58e25b71e5252529ef3bde1 *R/aphid.R
86dae797c525c4a1d57f8701ee2a100f *R/backward.R
017b6e75fc134bda21803568a80c8c90 *R/data.R
44c8feec4827b4f847f7cde12110aa7a *R/deriveHMM.R
7362ebdb11cd941b386a526c68a0007d *R/derivePHMM.R
3e8d25270c673ef2fb04fc834498f5d2 *R/forward.R
26c4634c7108f9fea8953ef169041e15 *R/generate.R
07c4eb023873d37235a13c8e81124233 *R/plot.R
c73372c6bccf9abbfe6b1eb2539c530d *R/posterior.R
10a911c65d14cd57379a157c0eb3183b *R/print.R
e4ac346f3fbc1d423b70517a80ba7772 *R/read.R
217782b03d6047b767b4c78e7a1acb38 *R/train.R
69fd6200c5a68db3f457966b7e9dd3e0 *R/utils.R
1f2a9e517e9eb4ff55744052d4f6a06c *R/weight.R
fcbf01afccec4fee07809ad535da1c0b *R/write.R
90bbf57c07ccc841fd1a03e1ef7f55f5 *README.md
39ad264047326c8aca0ebba875589cc2 *build/vignette.rds
2cec5e355bd0f72eb17885d6f7c531f9 *data/casino.RData
5591c4ffe2abef1e50d907b8100b7731 *data/globins.RData
6d7df45f3d14ed8fbf40808b19071350 *data/substitution.RData
61f020cb66e800de4432471972c84f65 *inst/CITATION
075369a018ed73256d9f9b55865b2036 *inst/doc/aphid-vignette.R
c4a432af14537842b28b05d1ff083970 *inst/doc/aphid-vignette.Rmd
0cbfa2cb993057819b213596858a5ce1 *inst/doc/aphid-vignette.html
392f3950a4512f2a31c877f5673be3d1 *man/Viterbi.Rd
981b190b2cdcafcff642857bf508504c *man/align.Rd
981813fa1469ecf924d5ec11dd4da3df *man/aphid.Rd
a0afd1368edbbdf8e3894a167a5fa337 *man/backward.Rd
dee2879923ae5c4a1eaef550250fefca *man/casino.Rd
bd38acc621d57c521c532fa32faa3317 *man/deriveHMM.Rd
14a9cf5e03c7375ce2deefdaf160af3f *man/derivePHMM.Rd
b991f365af12d3e120747a9ae901fbff *man/forward.Rd
9a4576f64138c7720d2ace55a462863d *man/generate.Rd
eea7b6d86ca7b2c4c1dac830a3809e5c *man/globins.Rd
f9679e0e28d1c109071da90f7f7bbb9a *man/logsum.Rd
bec686d120c6da4a5781b8b9a6347c2d *man/map.Rd
48c4cf61dd66f9a5dbdd848d7a8e29cd *man/plot.HMM.Rd
d4269a84a42ab8ca60f5c25d09783538 *man/plot.PHMM.Rd
ae627a12fb714885ba583fb3502bbe33 *man/posterior.Rd
f63481d41e9a23f95009252922ae3aeb *man/print.Rd
b5673bbca574ec38c5cc68e44bca3b1e *man/readPHMM.Rd
e1d38c8df38da138f0ad17d7a6899471 *man/substitution.Rd
cc5831b32841085d5b14c4a1c14449ef *man/train.Rd
c411797a99fc16b6475c30f20540bd3c *man/unalign.Rd
32b7002a8a302ecb64d607d86477f093 *man/weight.Rd
3d9066085de87f631b13f6b142859d1d *man/writePHMM.Rd
52561ed26ae347a8e6fe51082d35e738 *src/Makevars
734d9c37431eda5b2181eb943d36db42 *src/RcppExports.cpp
4ae89f800fecac313175228ec1a0c7d7 *src/ViterbiC.cpp
bc9f7ac0061ca90a2d5079a9af659811 *src/init.cpp
52e6f9ddd6cc38d74b9070faf6671cf4 *src/map.cpp
d4dd8f49d66b42529a3f54a467269a1c *src/utils.cpp
3b6e844aed784b2217f9fc8b120a64dd *tests/testthat.R
c7c58079606ef9b1e02c8d2cea8043a6 *tests/testthat/test_HMM.R
518ffa84e6cc033ab125ff896c9ba871 *tests/testthat/test_PHMM.R
c4a432af14537842b28b05d1ff083970 *vignettes/aphid-vignette.Rmd
e1a83c18859052a58c0475ff0facaf80 *vignettes/aphid.bib
