f0bd3204371335fc5c0cd6bbddb60d56 *DESCRIPTION
cd67094eb293cfdf00d515e8771fb07c *NAMESPACE
5800e599a3c9832c75567c2759297221 *NEWS.md
f61bb1568634f08d322772fe63754fa0 *R/Alakazam.R
465eb705a786ce64fd7f64885c033855 *R/AminoAcids.R
3c6c83f18343cfb40f9003bd720c22e9 *R/Core.R
63f6d11d56b1ddda5ef74cfea4679df0 *R/Diversity.R
7b4988a8ca82fe4ab5530e8dfb56501d *R/GeneUsage.R
1ad4987139ce0e8b965e1d3570c61118 *R/Lineage.R
dd49d153b42de9412837eba38b9ab094 *R/Sequence.R
80028ee422a593ed3ee83da40df21397 *R/sysdata.rda
9120686cff5d2c1fe15088e364b7077b *README.md
48646fcf0c8eeafb484d21449e8b5dca *build/vignette.rds
91f55af8e29b32c20f2fee86cda158eb *data/ExampleTrees.rda
fa522ddc96c6455e00f330ad3f4e461b *inst/CITATION
97a2135a6a792ac2da0006ee529cb0d8 *inst/doc/AminoAcids-Vignette.R
c660f17dd4670b46a05ce7a82ea52c9b *inst/doc/AminoAcids-Vignette.Rmd
7f427b0710f97a7e76e26a43e7747b18 *inst/doc/AminoAcids-Vignette.pdf
5de8905d5a0783e919a603c5a8c410cb *inst/doc/Diversity-Vignette.R
a44a3d11802cfbdfd633e3eb02c415d3 *inst/doc/Diversity-Vignette.Rmd
01841d1617346aa27ee2ec6704e28cbc *inst/doc/Diversity-Vignette.pdf
722ba5439ca81c91f8a1fcc908121661 *inst/doc/Lineage-Vignette.R
138fd8dc403e506aa732333c8396d135 *inst/doc/Lineage-Vignette.Rmd
33a0e4715353038e16d9603db6c8dab5 *inst/doc/Lineage-Vignette.pdf
fa0cc1550d5ef8dbc3b9feca2db9b70b *inst/extdata/ExampleDb.gz
c809981448e8d0daf0c040400806debd *inst/staticdocs/index.R
5789ff41bb43d48c7bae0166649869de *man/ABBREV_AA.Rd
7a82525a4e561321b670aa47bd18e271 *man/ChangeoClone-class.Rd
a11baee932ec1ba680cb336b8d00a122 *man/DEFAULT_COLORS.Rd
2ded2c1ff5bbb052c8a8fa2e36870816 *man/DiversityCurve-class.Rd
ca3f2a7afb1ed8fb396786c7fd3a5768 *man/DiversityTest-class.Rd
548612e41f6b27448ae1a5797f0a8e21 *man/ExampleTrees.Rd
1b36d8a134dc2836dacb42bbbce9ee65 *man/IMGT_REGIONS.Rd
2d3dddf1e395d8bd57eefc46fcc93989 *man/IUPAC_CODES.Rd
f66c97282da31c8ffe711ba8c3266f5e *man/alakazam.Rd
f626ba1590d65104acc24ca233aa1849 *man/aliphatic.Rd
204e1bad862d63426fed42f556956fd2 *man/aminoAcidProperties.Rd
7016a3753a848ef3f1533a5e2a3520aa *man/buildPhylipLineage.Rd
ec5556b82a424661b190e2c46aea8120 *man/bulk.Rd
90b8f3042365eed2762ec88e2e67dc30 *man/calcCoverage.Rd
fcce543b125f2a6d18e235fa3c6ede82 *man/calcDiversity.Rd
3d5db8455ac60c47a738b5055aaec60c *man/charge.Rd
db0cb13c0f07ccde7181df5d468a0e10 *man/collapseDuplicates.Rd
e9acb56f2a306018e80d8f190066ffde *man/countClones.Rd
098ee778323c7809ff69dd898291aa7f *man/countGenes.Rd
fa1b66aa4339599f0cf4136a5f623713 *man/countPatterns.Rd
7e2deb8bcd2c6946d563d1b6600d6a93 *man/estimateAbundance.Rd
441fd192865b624c1a407437d04c0016 *man/extractVRegion.Rd
e3ae0c3cc47a1d7d9240eb8b85f35d16 *man/getAAMatrix.Rd
fa84c592df63e25838db3dc8dc4bb30a *man/getDNAMatrix.Rd
1a9dceb908ca8713d3d1051cf6923222 *man/getSegment.Rd
17a81b49babda9d3c1933a3a5b3766be *man/getSeqDistance.Rd
a86d79b898cd6f16b3ba810bbdde35ad *man/getSeqMatrix.Rd
8d99232e73fb1dd95c1af4ff00dba6c5 *man/gravy.Rd
a78abeeacf43696476f9c43c4b9bb729 *man/isValidAASeq.Rd
214e447ad166bd7ae6d856ec04f6ee31 *man/makeChangeoClone.Rd
b67a3924a32301e190d9f6ae0d7b137f *man/makeTempDir.Rd
38963954380394c3f1e5f4c72cd529ed *man/maskSeqEnds.Rd
37cee3c54d528f999a74a8b5f3d2946f *man/maskSeqGaps.Rd
fe1f4b845f01e9545a01fa997d512d7e *man/multiggplot.Rd
0f945cb221eca8c44cea534773d62159 *man/plotAbundance.Rd
46c7a788eb6526465c2348a91bd3ec77 *man/plotDiversityCurve.Rd
b0a9d99f81b60b95090f2426982b1c4f *man/polar.Rd
2c4d4273a0431f7e854282f2d34b1418 *man/rarefyDiversity.Rd
5dae16e929c170ae267f7be116f9ca8f *man/readChangeoDb.Rd
412197474d2456ffb5b31e2bfda98865 *man/stoufferMeta.Rd
30a2e86f367af83b481caa02c16d127e *man/testDiversity.Rd
a0444dce3b477a21c6809b74b802fa2f *man/testSeqEqual.Rd
cd78151399b435614225bc538c280b32 *man/translateDNA.Rd
865b6b8c095fc732330605f6ba10c15d *man/translateStrings.Rd
354158c17bf47dd131c3e9a13acf1570 *man/writeChangeoDb.Rd
c5cdb6c6c798250a6a656482bb2437c1 *vignettes/AminoAcids-Vignette.Rmd
895aa927cf790155466b4b8dc90b993b *vignettes/Diversity-Vignette.Rmd
ade1ffbdfeb4cee34d7d0bc065528276 *vignettes/Lineage-Vignette.Rmd
