d8d437cb4a8cd58cf11111e9794a0742 *DESCRIPTION
4e13e806ba47ec3f36ff8bfc6b47af01 *NAMESPACE
261a5cb1c3f99fcf5258fc00581d1782 *R/DataApes.R
010b92b31a817997550d2fff8d6b18cb *R/DataCetaceans.R
cea3aeb7ef747aa571e2c309b99f95a5 *R/DataFelids.R
d182a526e84a62e41a886c4c89d43f5e *R/DataOrnithodirans.R
ea4b95f23b3f67a1db24a706cf470a15 *R/DataSimians.R
3c0e43736f7574e5966d51c1bfe8b381 *R/DataUng.R
868554c60e9474d98c9a6333ed652ff1 *R/PGLS_fossil.R
10ab0016e7a99bf04e7f49a3c9bbe793 *R/RRphylo-deprecated.R
f2ab4a0232d86d8773a7463233e14389 *R/RRphylo-package.R
c4070e0e31951aacd770c6fc5995f490 *R/RRphylo.R
c9b245023564ef9f470b35e7b1c89a7e *R/StableTraitsR.R
6fc336cd3b41c6b44fdb7b7b405c4c5a *R/angle.matrix.R
25ce750b76e9940ff670ed4f6eee6332 *R/auxilliary.functions.R
a8d8f5ef1480d39718e7073b899fe11b *R/conv.map.R
5a9bc5bb65ff78024cfe9ea4264a85a4 *R/cutPhylo.R
ad73f62ee9fa432b6cdfcb309570b8dc *R/distNodes.R
74dd0c5aa70022458e77b88a87ed492d *R/evo.dir.R
a4e4646398d8c9d445846fc1df24426e *R/fix.poly.R
7fd9bb8a9ce8ad0b9b4483210e8c5907 *R/getGenus.R
76a2531713a821f1df9167dc4fe8b0c5 *R/getMommy.R
5c46f168e359fcf5d8ee8e9d1fc8a36b *R/getSis.R
46af091949640773097927ceeacb8722 *R/makeFossil.R
bda7249115ad6396415da5a18f1d4f7d *R/makeL.R
92117ccc80fd1a5360f5bbd1da70576f *R/makeL1.R
e71dabaa58444e02c8b4c5661c40020b *R/node.paths.R
e0e0ef0e865c8f4bfc70392d23b8a291 *R/overfitRR.R
b7ace7a8476234ac2211cb2c9b7167ae *R/phyloclust.R
2086a2f419da78959820fad44090ab8a *R/plotRates.R
ab62160afcd16ae380fc720082fef116 *R/random.evolvability.test.R
0bb1a153b17232c75806d365c0998467 *R/rate.map.R
bc54b7f4def5bc7ee6512d9e099bddd3 *R/rescaleRR.R
0c483efb976591820c987318d194ba8d *R/retrieve.angles.R
8fb7e19de7c1d803193c4b01c641f515 *R/scaleTree.R
8f543f18686c651ddea69a82a22df574 *R/search.conv.R
8ab85716d8176b4d9207a38b6802d13c *R/search.shift.R
aa94d3c5452b01abba52585db51d2444 *R/search.trend.R
0e13234268335238ded4858dc735bfc8 *R/setBM.R
d76bfcdb7d3f8224226032dbc634b915 *R/sizedsubtree.R
7694a5f44ec0b299021b300237cfcc3a *R/swap.phylo.R
67581ee2eec581a554d2b7c9c468c15c *R/swapONE.R
6af3f5d65bcf593b170309d06966eb76 *R/tree.merger.R
a87ca38420c20324db0e7c56f6860382 *README.md
bafdf5c6bfe91b125852ae76c008a137 *build/vignette.rds
3c3127f2d5d42c3912d57742f834a285 *data/DataApes.rda
8f95ad61fa098a0312f427dfd081a94d *data/DataCetaceans.rda
fca9800a2683faa2384620e5c1d69467 *data/DataFelids.rda
ca1f8209c9fbef21c62244b04b7dfea2 *data/DataOrnithodirans.rda
07f781c6d41cbfe4cc6d7733bc4474c2 *data/DataSimians.rda
5944cb20f016659dfacf56bc485c6c27 *data/DataUng.rda
0698f7f54612b24bf770df1991045379 *inst/CITATION
f493d8f4e9083ea45232b7d9771fbf31 *inst/doc/RRphylo.R
82365041f0fb26336793dbfbfd3b6bc0 *inst/doc/RRphylo.Rmd
7b86d6b7ec5dd91ce73f3ecf7acddda1 *inst/doc/RRphylo.html
3771ecf42c182660a6f600103d0b150c *inst/doc/Tree-Manipulation.R
4e129fce2c2c4d12ce6040567a713779 *inst/doc/Tree-Manipulation.Rmd
04cd5dd09e1b933ad489f11655813814 *inst/doc/Tree-Manipulation.html
99dc3ab8d4e8890f94ed170a0086b013 *inst/doc/overfitRR.R
5709782bb53e8af585c2958ac4383e9c *inst/doc/overfitRR.Rmd
fa188e013c00ffc1075fd99f8a46406a *inst/doc/overfitRR.html
8667f11ea77e4785912f70e5e196b3b5 *inst/doc/search.conv.R
8246f5672bc99612dbbbd6eb2ac23a3f *inst/doc/search.conv.Rmd
f2222f479fd4019593ffd86bae770a2a *inst/doc/search.conv.html
b8c09d47138412606882d2e819b6cf39 *inst/doc/search.shift.R
67b434f8f1389277eb6c523ca47f57c7 *inst/doc/search.shift.Rmd
ba141e9530160db836a19edf9cb897df *inst/doc/search.shift.html
c10e5de403d404d7247cfa8aae7113c2 *inst/doc/search.trend.R
7380b4b5e697b8a13d5eca101b1c84e6 *inst/doc/search.trend.Rmd
f39c3ca1e5f77bb10d777df4623fe406 *inst/doc/search.trend.html
add1995c11c30e6807eb25f0f6eda35b *inst/doc/swapONE.R
241e811a63327980764cc9713475ca59 *inst/doc/swapONE.Rmd
7eb665adc6144d2d2c1f9a26445d336e *inst/doc/swapONE.html
cf85045a804de3a4a47e510e331887d1 *man/DataApes.Rd
8a33c48eda456d4fb64cd196831aee46 *man/DataCetaceans.Rd
de67ca56336b6f560839fc0d29526667 *man/DataFelids.Rd
f592999474d4737c21f59575ac556652 *man/DataOrnithodirans.Rd
a847da11baa26e542ebbc453389dc0c5 *man/DataSimians.Rd
427d06e83f321e383d0769484de0b08d *man/DataUng.Rd
48987ec6097a2d14366b566cc969dc1c *man/PGLS_fossil.Rd
457bc5c460bdbf1fd97cdf66dc81d55b *man/RRphylo-deprecated.Rd
8cf785ac2c9bf9b8a60648de1bd6ade7 *man/RRphylo-package.Rd
a1e454b02a660a90c47e87885dcf2a04 *man/RRphylo.Rd
49bad362f5c536eaa1deff9a14383650 *man/StableTraitsR.Rd
b20f26a1bba2858e9de4d41f0b62b610 *man/angle.matrix.Rd
d2dac8286d4d013b5b84d15219f0bebe *man/conv.map.Rd
3020eca694278e01db7336fe3bce2623 *man/cutPhylo.Rd
bc18f45c9d57c19cb6a5b02a3517c00c *man/distNodes.Rd
a8020baf596868d2ba052076aab27967 *man/evo.dir.Rd
3e5faad6e7d8cc1703229ddc148b5ae1 *man/fix.poly.Rd
0b3c435d765634d2ae269901c397eeca *man/getGenus.Rd
0325923641b041c9f46d03921f403816 *man/getMommy.Rd
87899a18538b1d7934f815cec9ac60e9 *man/getSis.Rd
aae4e8bf77e5564046bdbf0a533f96b1 *man/makeFossil.Rd
81913e50f1d7c91185b865fcd568692d *man/makeL.Rd
6a4c51d45eaeafa62532e307d6fde604 *man/makeL1.Rd
ad5478da4ef06a25e497601bb1e01724 *man/node.paths.Rd
014094e8f2c56d2dfd59019c36559d48 *man/overfitRR.Rd
498bb61484e16213807837e834669e9c *man/phyloclust.Rd
25c9cb95907c332dc1e4dd2e440c554c *man/plotRates.Rd
56d71cc4fc75670a896facd9f398a7ad *man/random.evolvability.test.Rd
7204f113de311acc15a5f896c28f5c98 *man/rate.map.Rd
5da5b3542535dcc0c012d1b66e539d30 *man/rescaleRR.Rd
3e82e176936cf8da68a1bcae9cb70ecd *man/retrieve.angles.Rd
427e9d1a538739f62b13db8bc9bc5400 *man/scaleTree.Rd
bd6a74299b646d3bc2ea786d5628bf31 *man/search.conv.Rd
3a85994df6a9e9c9fff8c6826952d64f *man/search.shift.Rd
33e76c067950c0a3cd6decb846a1c918 *man/search.trend.Rd
67a7a6a3b82f3925225ae856c98a7f9f *man/setBM.Rd
031b461db3c0b2ef60df70493f756434 *man/sizedsubtree.Rd
769ae1945ac9614d74b7a6a4e1f20943 *man/swapONE.Rd
8ff95f708d6add52395f6740c45380de *man/tree.merger.Rd
82365041f0fb26336793dbfbfd3b6bc0 *vignettes/RRphylo.Rmd
4e129fce2c2c4d12ce6040567a713779 *vignettes/Tree-Manipulation.Rmd
5709782bb53e8af585c2958ac4383e9c *vignettes/overfitRR.Rmd
8246f5672bc99612dbbbd6eb2ac23a3f *vignettes/search.conv.Rmd
67b434f8f1389277eb6c523ca47f57c7 *vignettes/search.shift.Rmd
7380b4b5e697b8a13d5eca101b1c84e6 *vignettes/search.trend.Rmd
241e811a63327980764cc9713475ca59 *vignettes/swapONE.Rmd
