91c69b5a5bc06c01066c2bece75e685b *DESCRIPTION
7bf1ccc26e5826ec963a19aff15d41f7 *LICENSE
4b1efea7250c2d7eb6c8f9ca591d6ae2 *NAMESPACE
921c6230fd224a99b2466faff3acb9c1 *NEWS.md
2f61d3c22960fb5f55ae3ecef94157ee *R/EMM_functions_cpp.R
fdd6c8337d500a5bae4c2f8d31c7e3d8 *R/RAINBOWR.R
9bc5131421c33f14ab52c2e291b548c8 *R/RGWAS.epistasis.R
fdfbb6466a9b05baf65dcf71c2cfe6b6 *R/RGWAS.menu.R
34afe84d2794f5b7441aab551f91fa89 *R/RGWAS.multisnp.R
f66e96dcaa5d71d34cb1fe0005f0531b *R/RGWAS.normal.R
030684763dde9a1b52b4c642a038dbea *R/RGWAS.normal.interaction.R
080e6d548aea2cb7f9068e61870bf5ee *R/RGWAS.twostep.R
0a34b8586674d9ad5c425792f6249a01 *R/RGWAS.twostep.epi.R
3fae5741e4163d2d13f86d81133eed70 *R/RcppExports.R
35b871b4a75d438a181cc4c4732d1a2e *R/Rice_Zhao_etal.R
df429b1913154d233f3ccde96623eed3 *R/Rice_geno_map.R
03df50ec745fd846fd1c3436f17e0419 *R/Rice_geno_score.R
33af6bcfd26b3b7e49dc438e5bfacd0c *R/Rice_pheno.R
da5e086e0de58dffa8e817ca56eb63cb *R/SS_gwas.R
6e6aff52daa24ce5f80c36770647d469 *R/examples/EM3.cpp_example.R
9ece246baf640f535e14fbb001b3bd2f *R/examples/EM3.general_example.R
d906a561fbd0ee0c744ec9df49ed2151 *R/examples/EM3.linker.cpp_example.R
d1ea7ae9ccef74c9999ecce486bb62bf *R/examples/EMM.cpp_example.R
329b494c74fc9f67cf25191dcb0e5279 *R/examples/RGWAS.epistasis_example.R
e51bc8b5ba59885bb7f0e22b2ed46424 *R/examples/RGWAS.multisnp_example.R
aabff0b2202feed0f7e5ece31b756f8a *R/examples/RGWAS.normal.interaction_example.R
804bc3a4252392dabcc318c88e2e7544 *R/examples/RGWAS.normal_example.R
bb91a50f7a2e93acea205785296221ed *R/examples/RGWAS.twostep.epi_example.R
da2e917e8e2932687cd9460774eccf69 *R/examples/RGWAS.twostep_example.R
787daaf844c8efbdad149f3cb857334b *R/functions_for_RGWAS.R
2aefd1658da3046c039377b9f06de0fe *R/genetrait.R
4709723f0fa02f50e6f0f2477df1fb52 *R/other_useful_functions.R
ebcf7173a3b8854e05cd48c82d5fce45 *README.md
6fb250201bd3e147504455176baf3469 *build/vignette.rds
31348c29e4ffc7dc523c4248f3df0b72 *data/Rice_Zhao_etal.rda
7c22e8bd5c047dad605d2b0b401627ba *data/datalist
8eb3b4de1fea9417be9185fd741eb1da *inst/CITATION
4648a5b0f65420b514c57a62c7a37e4d *inst/doc/RAINBOWR.R
bd1ec93bf2441a8a82abe8c40eef2a5b *inst/doc/RAINBOWR.Rmd
a1e6ebb2c850ad2bd5196fc6cc90ec9d *inst/doc/RAINBOWR.html
fc43588133c424a67ff4d5ecce2267a6 *man/CalcThreshold.Rd
720e2194bbb7cc4647afb4c4045711c9 *man/EM3.cpp.Rd
fb7a4ea077d5257ff63f407e6631ee5f *man/EM3.general.Rd
2c35dc8b527951d296f1b990ae8e4a63 *man/EM3.linker.cpp.Rd
c467f2528e63369881db28986cd75063 *man/EM3.op.Rd
66cac2e8daa124981882c3ca3e8d75b7 *man/EMM.cpp.Rd
23243f44e3827c78d5127e6adae99b8a *man/EMM1.cpp.Rd
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619c5254bb6d054c931231378e944a5c *man/MAF.cut.Rd
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8a51ede0337ac78b25b0b7f5e4064806 *man/RGWAS.multisnp.Rd
7b3696f8ccad6d1417fa582745cc51f4 *man/RGWAS.normal.Rd
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1fb3ca3678ddc304f93134c5a082c1b2 *man/RGWAS.twostep.Rd
829229c85429aec3ae4e7f780d58b3f5 *man/RGWAS.twostep.epi.Rd
8a75ad127bf208835910f6af27b91b1b *man/Rice_Zhao_etal.Rd
104280b9bc00f590a0b6d39269ec45f7 *man/Rice_geno_map.Rd
a610b5f25f78bc03fde6365a61fbdff0 *man/Rice_geno_score.Rd
6aff726f13a3be7a488fbbc9968f12c4 *man/Rice_pheno.Rd
5c0cc8dd69a4669ffc72f6b14de59863 *man/SS_gwas.Rd
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92078451f6b3c32c9fd2091716330313 *man/score.calc.Rd
b62390aca4f11643f8a2ae2cf240328e *man/score.calc.epistasis.LR.MC.Rd
40345c1117bc10c44958f5a6cccb09f2 *man/score.calc.epistasis.LR.Rd
db05cace6ad11b28f56f06b8f9c7e525 *man/score.calc.epistasis.score.MC.Rd
0658258e1209a19d3abeaaf45a5297e9 *man/score.calc.epistasis.score.Rd
1ae57aca4e85fadcc549ec1f0d574df8 *man/score.calc.int.MC.Rd
e9d67259be3cecf81088e5b1b0ceb7e0 *man/score.calc.int.Rd
ff681d22edd10c6b2689e3005cd9e146 *man/score.calc.score.MC.Rd
df52f8e401fd2d25bb851dbfeb94247a *man/score.calc.score.Rd
f31871427ffdd3f28545b5415dc0b707 *man/score.cpp.Rd
31dfb8875ad37cef92160006fedac526 *man/score.linker.cpp.Rd
e933603db534dd978f8a364ce4d7eb78 *man/spectralG.cpp.Rd
360bba514cc60960abf248914906903e *man/welcome_to_RGWAS.Rd
024a09865017ff9907db040f9a4a30b3 *src/EMM_functions.cpp
72c2d7b1def2e88000a5e639496a6a82 *src/RcppExports.cpp
bd1ec93bf2441a8a82abe8c40eef2a5b *vignettes/RAINBOWR.Rmd
