62962143101dedba3baaf82f4e807e46 *DESCRIPTION
b1823ada95c5c79f52ef6ecef6dfde26 *NAMESPACE
bf137b15b6e6054eea1fb49b18bd4dd3 *NEWS
ae13696e5769b2e2d028f8ee91854323 *R/Ancillary_Indicators.R
e7924c0158ea2334873bfc005506679d *R/Awatea2OM.R
7bc02e89299b3a9af44a0fac9988f6c5 *R/DD.R
9252ac5d9f88cd7b8074811783de2a4e *R/HCRs.R
89bde17766d69be39c34234c3aa04ccf *R/MPs.R
02454fb43c5542f885e92db1ef06a09a *R/MSEtool-package.R
5bfa3d68bf8efe054300e3a2b0220f67 *R/Misc_exported.R
4229eb442662978df009c0e422c8e5a2 *R/Misc_fun.R
29e31fcb31eb217af279bb5ed5022597 *R/Movement_calcs.R
b1ab30a8239053207e6c5d412df8ba46 *R/SCA.R
ef33cedf2be1999817625113439c16d8 *R/SCA2.R
5c5c91f0759d1c16710a88545cfb5170 *R/SP.R
daf00d5e73a6e102dd0da7b2fe4f7ae2 *R/SS2Data.R
f48513f1e3fd68044e7bf9f4451162d9 *R/SS2OM.R
1c271076da6c6bfe0626f16ddb64c982 *R/define_S4_class.R
bb7aed6f9458881b562da7d0e237632a *R/diagnostic_AM.R
2343ac5bfbf4d385ed31f021e9111935 *R/document_data.R
9c39cb427e193a3c129edff04af2143d *R/iSCAM2OM.R
d96c5a1b4c0332600801e7fbe5ca2330 *R/report_DD_SS.R
d54ab7477b44c4bbfb1a654eb38d66ed *R/report_DD_TMB.R
d57a011ad51c145787cb032f8f2bbe52 *R/report_SCA.R
6682dc3f9cf2f3c84267c66585299f0c *R/report_SCA2.R
cea304941a9ccb08c1bc3cf48b0775fb *R/report_SP.R
b747a2ccdcf055991ba1229b3c92ff8f *R/report_SP_SS.R
b0092fd3a57c3bd7b8dec32d12a8b745 *R/report_auxiliary.R
9754202b193bbcaa1a94fceadaf9f573 *R/report_core.R
9a41d6977ddd2bd3a4dc308e22bb998d *R/report_html.R
96e6c03c1256768940e81d5a1474ee6e *R/retrospective_AM.R
7fd818fb8aeeb3116285dfdfd916b74b *README.md
bf9c5e89cfa051afe19d0b88e089f5d6 *build/vignette.rds
487e9437d360519ab7f9f1e7d2bb52b7 *data/swordfish.rda
fb3beda1963f182d517b486026302f9f *inst/doc/Assessment.R
77c7bdb4bdafa192d52db0d4661182fc *inst/doc/Assessment.Rmd
99515b169a4b64d139fea9980b4cc4dd *inst/doc/Assessment.html
43e5688c4c6812bd885cca69a4c92e3d *inst/doc/MSEtool.R
744067fb9b57eca32ca6dbe9c399017c *inst/doc/MSEtool.Rmd
cd07c7d0d76a2eb7d36179d4f2e20ce8 *inst/doc/MSEtool.html
2c6e6336bfa7af3c9b203f88c420e6b7 *inst/include/DD.h
e02359ae8cd8b3fc2ceed57221994bed *inst/include/DD_SS.h
94e433e9c8fe8c047fdedc98aaa72740 *inst/include/SCA.h
b6d0e011b7d1cf054cd11f36dbc1221c *inst/include/SCA2.h
09be375c3a8cc602dd92c2e95da6ad5d *inst/include/SP.h
993afee49869f4699bfb4605fd5f3e94 *inst/include/SP_SS.h
12157aa6c8d32838571b3d893e8c5a81 *inst/include/functions.h
7376de2e74c9247d4c293d256aab983d *inst/include/grav.h
ac85dcb4aa46db68a5e941a9ec501315 *inst/include/grav_Pbyarea.h
9cfb6dd1d350139e8a08a8ab75f9d9be *man/Assessment-class.Rd
504cc92b30fcb9c79322e8e7e0f0de18 *man/Awatea2OM.Rd
8d8010ae0969434efc30ee8726dee024 *man/DD_TMB.Rd
1ffa13bc50d83309e51ebd14bbf7706b *man/Data-rich-MP.Rd
5d82ba050eec68367c433ef47c3c5df9 *man/HCR_FB.Rd
96c226f38d3c677352b07bcc7ac4400b *man/HCR_MSY.Rd
7116ebd43a628fdb7c12cc5eef071d27 *man/HCR_ramp.Rd
fb2ee6a17b116891476d00e5964df57b *man/HCRlin.Rd
13cc73a574c577c6ac207f270f0995d2 *man/LinInterp.Rd
4927623d82ed3085f0c76da8ef9280db *man/MSEtool-package.Rd
1043eb793c1c0c8b19a3c475860bee75 *man/PRBcalc.Rd
13b1fcefdf6a8ac72b525cec8af0648f *man/Probs.Rd
68a94fc76db047390807e1e6dfd44189 *man/SCA.Rd
00b52c13156e8ee1016297e55b068652 *man/SP.Rd
78a028300b113f4e9feeaf7405a90101 *man/SP_production.Rd
fe4d30516fc21e021d1e1921f41d921a *man/SRopt.Rd
6aee09b6c701b9ebfcc4c60e7354c226 *man/SS2Data.Rd
e791d60b579e946a0584abf42c053624 *man/SS2OM.Rd
945167cb969526e4737bc6ef43c891cc *man/avail.Rd
e6cad78f93b0ebb498c978abf0b1c359 *man/calculate_TAC.Rd
b3c669b752eb76f98bd8962a389fe9de *man/diagnostic_AM.Rd
cd403575f2b433e57735dc1efe4de4d1 *man/fetch.file.names.Rd
967aaf1cc8034ae4f8ccd7b27012294a *man/getGpars.Rd
d453607720f41255ac8c319acbec43cd *man/getSR.Rd
a49a6c227863cc590c1c21187768567b *man/getinds.Rd
b8fb316effc87b41300401968f3e0be7 *man/iSCAM2Data.Rd
be84d561493862ba6153fd6e6ac41483 *man/iSCAM2OM.Rd
41593c6edae4495fc57fc2a53e994484 *man/iSCAMcomps.Rd
ae1f23f01b9c0d3ab2506d5ebd4fcacf *man/iSCAMinds.Rd
df943b0db565ef88afea6bdd8fd4ecde *man/load.iscam.files.Rd
0c8fbbb0201d8e9a3dadac634fc19e3d *man/mahplot.Rd
e746747497002b1333d63e2b9974dc91 *man/make_MP.Rd
579951bd9a7a40a2188464971f26521e *man/makemov.Rd
6dc5360f6357ee5decab9ca34649f912 *man/movdistil.Rd
7005bb5d40a4512b6c1fcb9e071bd121 *man/negcorlogspace.Rd
219b4788bdea414eeb18dcdd7a16855c *man/optSR.Rd
cbc03c18a2e5faaf3fad354d46a3f862 *man/plot-Assessment.Rd
1f736dcf63399d87e35634f189bd21b0 *man/plot_SR.Rd
d858b0be3d7685a4ea52e24f04770146 *man/plot_betavar.Rd
c4cb5bb4cfa389e02ea5319698ae9cc1 *man/plot_composition.Rd
f1f8d2ab8689178c4de189972a5cc3ff *man/plot_crosscorr.Rd
7ee2191abea0acc77a1d4ca5eb1e4d81 *man/plot_lognormalvar.Rd
903b70fab649f7da44a16cb9d229b322 *man/plot_residuals.Rd
e0a78fcda0f1b3bf37a6ce0a08710f6e *man/plot_steepness.Rd
df29220b7cb68805946e964a75091413 *man/plot_timeseries.Rd
ed137a3a8caf103c14f3e6d88bb7dbf9 *man/prelim_AM.Rd
1b9362d4cf109778b97393c153a0610e *man/profile_likelihood.Rd
8f9980d6d29142875d99e8d08216c717 *man/read.control.file.Rd
339c8c8ba7bf5bfb05e7acf15d507355 *man/read.data.file.Rd
ac1374b8188d587f82a146aefe4ea215 *man/read.mcmc.Rd
dc179c724f50afe2fba030091e34e7bb *man/read.par.file.Rd
952d1d14a37748553faab2ad04e6277f *man/read.projection.file.Rd
f81328c976bbf540540c5a9e917b41a3 *man/read.report.file.Rd
2d263b366d79772fccf5bb9de1562cb2 *man/retrospective.Rd
abbb8cdf72efa7b8d7b663ffe02abbd2 *man/retrospective_AM.Rd
8b41862f6883e330a6722c6bd0e8939a *man/simmov.Rd
dfeaa365d6c65cd4487bae37ea79beb9 *man/summary-Assessment.Rd
4536c3bdb210cb49deb22b649b0deb5b *man/swordfish.Rd
6bcb0d85af7cdbd52def97ba05040fca *src/MSEtool.cpp
77c7bdb4bdafa192d52db0d4661182fc *vignettes/Assessment.Rmd
b4a0bf41a1eaf1559efa8e3250bce96a *vignettes/DD_TAC.png
3ec197c7fe04d9cb496b1b34080251cd *vignettes/DD_Tplot2.png
684863c6f4e4639408773e03d66b3883 *vignettes/DD_diagnostic_AM.png
a91f511c35ab8c13652486a5d03352f9 *vignettes/DD_profile.png
aca8c73b11a1c272977c925edf833f69 *vignettes/DD_retrospective_AM.png
be67fe5fabbca2a8ddefee128df7be2c *vignettes/DLMtool_design.png
81f111de4f0d7e765db94fed2154df8d *vignettes/DLMtool_logo.png
2a6350673808da9e6e1f4f443950914c *vignettes/DLMtool_process.jpg
744067fb9b57eca32ca6dbe9c399017c *vignettes/MSEtool.Rmd
6f04e98d1655abb7d0772d36ef5c9636 *vignettes/MSEtool_design.png
