8f41f7ed7564072d184398b8df01e33f *DESCRIPTION
824738d9e64b71dcdc15f3dd4cc9f7d1 *NAMESPACE
cdab9254174b7ab070aae254d47255da *NEWS.md
8fcca8419edb8e5f6f05edb5a9ab164a *R/RcppExports.R
f6176e06683b11288eceee32f584ece1 *R/compile_reactions.R
8187cadc939326b491c14d43b5db902a *R/ode_em.R
ca7f7bed69c58ffba28e99dad5f38116 *R/package.R
29c88d8ada2ce642e79c72cd95c598d2 *R/port_reactions.R
20e60bf0e3cbe5102622be377a595b99 *R/reaction.R
c21bd34e407b6fb9ea2b30394ae65d5a *R/ssa_btl.R
f795e74184f331a7f8b2c10da7c8ba2e *R/ssa_etl.R
b7b8f91d2169ae81380dc6a6688cb423 *R/ssa_exact.R
22e74d4118b9cf37ecaf2fe701d7015a *R/ssa_method.R
6beb908b6b6ab7e726e4bacd15e24912 *R/ssa_plot.R
c3d7b66d3367069b461cf25f600ce460 *R/ssa_simulation.R
66591901b38888eb1284b979e2529d42 *R/zzz.R
479d3620835fc9428dee21a939f69557 *README.md
57fe49e601422a308c7278572afd7958 *build/partial.rdb
c84c168dedf5b1c8faf9a649b97eb3fa *build/vignette.rds
b9802047792b5effc3164ec8de783e78 *inst/CITATION
6259d0e8d0745ae7b3f91fa929136220 *inst/doc/an_introduction.R
eb938dd5bf4359137d770768c897dc3c *inst/doc/an_introduction.Rmd
8b559f741849b52fa845421f6e5cfce9 *inst/doc/an_introduction.html
3f33398e5a745c5868294073192ded1c *inst/doc/converting_from_GillespieSSA.R
47746770110cc68b84b66f35fae83c1a *inst/doc/converting_from_GillespieSSA.Rmd
5f2e6ceef5ed0207e6294a403d14f92e *inst/doc/converting_from_GillespieSSA.html
ea28ca14a02f3042f16a7ec1c9ffd3d7 *inst/doc/decaying_dimer.R
6f47b4e254ec886cea970c410da995f3 *inst/doc/decaying_dimer.Rmd
59b561a34f14c4d76ef299345e410f21 *inst/doc/decaying_dimer.html
e4fad73432106caa5cc6cee9cc6d0119 *inst/doc/epi_chain.R
a7cd8a2160162c9a6b066c0a692e1a03 *inst/doc/epi_chain.Rmd
58c6983388b58f17b904a5596b025d7e *inst/doc/epi_chain.html
df35701ec3d5431e46380cb634f5285e *inst/doc/linear_chain.R
d241625929888c6741be09391f7a13c2 *inst/doc/linear_chain.Rmd
73651c1f119506af149b19148d68e90a *inst/doc/linear_chain.html
731cb4f07f219d66c90e6513c8b2e303 *inst/doc/logistic_growth.R
4b965e551fa7ccde34c25ba7068bfbdc *inst/doc/logistic_growth.Rmd
f9467b02c32a93112677f88e7e4f3dac *inst/doc/logistic_growth.html
72d80133111eaf60d5e7cd959263eba7 *inst/doc/lotka_predator_prey.R
9326f9bfc31d687d3be5c322cebec6f6 *inst/doc/lotka_predator_prey.Rmd
35138cad9823b64a7dbdd38fc72c5695 *inst/doc/lotka_predator_prey.html
982d701ae77f8067874109debaa33ecc *inst/doc/radioactive_decay.R
1f81b1df3982b49719d59f1f528df279 *inst/doc/radioactive_decay.Rmd
6cf32a38a88d61214b7875b302c1baf6 *inst/doc/radioactive_decay.html
bf14a1fdda72e32ea87067d94e7e0a69 *inst/doc/rm_predator_prey.R
6117cd70a102e574eb32c91b68c51008 *inst/doc/rm_predator_prey.Rmd
17cfb003b7f01e03f06087951bd92e01 *inst/doc/rm_predator_prey.html
6273d82ad27b9c6b81720a65c12680da *inst/doc/sir.R
e7391b08c6fab835d293a636a3690c89 *inst/doc/sir.Rmd
8a02528c77784cb5bdb928b9b35ee607 *inst/doc/sir.html
1d412520a0f0af2c8d4943ea186d2be5 *man/GillespieSSA2.Rd
fac9373cca89eee02113c13c7955aa37 *man/compile_reactions.Rd
fd4c47d761c9f639c188d297da449d64 *man/figures/dependencies.png
47b54f1c878c06fc218c268b82d13ef4 *man/ode_em.Rd
c96b29826ec798db4de2bbb74affcea1 *man/plot_ssa.Rd
c0210cda6bede49cfe3187de64b0563b *man/port_reactions.Rd
d25d966dbf3fed048815f86e37d149e1 *man/print_ssa.Rd
003f2ed2f7a5820b7e778222e971ded5 *man/reaction.Rd
8fa77283b714c0b59d071c04df3a6229 *man/ssa.Rd
032520bc72e0f9ca30b91dbdea4c414c *man/ssa_btl.Rd
36b134ba50341247c4f15abc0328e0a1 *man/ssa_etl.Rd
ca1bc07dc11c6a0af5bdec024514398a *man/ssa_exact.Rd
f241d5dc87df5b81c9719bbfa3feaa46 *src/RcppExports.cpp
2d7b10d68397d56d4bc245999eaac4c3 *src/ode_em.cpp
166ea02c4eef71c30a186184ff0e72e0 *src/ssa_btl.cpp
221aee29b041c56a19147ab998d64e68 *src/ssa_etl.cpp
77a4f98d23d2a44ee18dc0f887fb9ec2 *src/ssa_exact.cpp
b461dd928b90cb3c7ad01db3c01e7869 *src/ssa_method.cpp
ecab019f3b376fe4149f3425293c4016 *src/ssa_method.h
3c51813705ee7cada64aa3197c5a8727 *src/ssa_simulation.cpp
bd82c1b97cec9914ca3a4895dd86c7c3 *src/test_helper_funs.cpp
aa471df35ea731cbaeddce5ad44993ed *src/utils.cpp
bde4cd198553f4f2f2bb64ade0b2f79e *src/utils.h
1f805c4be7c74e9df39994f09c36fa25 *tests/testthat.R
b42108b1f1173cd9d808546e2add30a1 *tests/testthat/helper-test_propensity.R
3f38c64eff5561aafca0ad2172b8874e *tests/testthat/helper-test_ssa_step.R
9598bac6aa535675370ee8e7fabeb5fe *tests/testthat/test-compile_reactions.R
abb0748b010db2641b963047e151e6dc *tests/testthat/test-ode_em.R
ed1ac27aaa28558d05f8ba4ee2327c4e *tests/testthat/test-reaction.R
a941cab6602f231a3f2a9d5077f81265 *tests/testthat/test-ssa.R
9bf4dc603912d1257df777b56624f433 *tests/testthat/test-ssa_btl.R
36fc2bb46a63705dfb136b951eea2c6f *tests/testthat/test-ssa_etl.R
95e9d9020887f6a76fcf9cf6471f3667 *tests/testthat/test-ssa_exact.R
eb938dd5bf4359137d770768c897dc3c *vignettes/an_introduction.Rmd
47746770110cc68b84b66f35fae83c1a *vignettes/converting_from_GillespieSSA.Rmd
6f47b4e254ec886cea970c410da995f3 *vignettes/decaying_dimer.Rmd
a7cd8a2160162c9a6b066c0a692e1a03 *vignettes/epi_chain.Rmd
d241625929888c6741be09391f7a13c2 *vignettes/linear_chain.Rmd
4b965e551fa7ccde34c25ba7068bfbdc *vignettes/logistic_growth.Rmd
9326f9bfc31d687d3be5c322cebec6f6 *vignettes/lotka_predator_prey.Rmd
1f81b1df3982b49719d59f1f528df279 *vignettes/radioactive_decay.Rmd
6117cd70a102e574eb32c91b68c51008 *vignettes/rm_predator_prey.Rmd
e7391b08c6fab835d293a636a3690c89 *vignettes/sir.Rmd
