0f3262c021dbba293b0bfc05f253f02f *DESCRIPTION
b1650c31789cbee325ce160a27f757b8 *NAMESPACE
1f0e3439cb08aae15be8bd04c80cef0f *NEWS.md
3b24f0075baedcefab509b43b41e5e7a *R/check_cdt_samples_convergence.R
a4c98ca6ec191d71676674143b804314 *R/coarse2estim.R
9f26c5394e70e25ff6cc80a2ddea53d3 *R/compatibility.R
3df0b9f5c1b926b609efa2dfb521dd61 *R/data.R
469cd40c401b58c2915e8fdc5c3df7b4 *R/discr_si.R
4d786660c46a25f5221b7ed33f4a451e *R/estimate_R.R
e1ef17d8b60f6d19a057c0392307458e *R/estimate_R_plots.R
70f45d19c248a7f76e041af6ed9ac277 *R/init_mcmc_params.R
08a620b1cdae6e051f12abbd8e0a25ea *R/make_config.R
b9d02bf126a15988e5f4eb147a8cf5a3 *R/make_mcmc_control.R
831c8600312c5171415524f685c4a374 *R/overall_infectivity.R
11b36ae8d9a46af8ee6270814ca845df *R/plot.R
832e706f03a47b7ac65d5530e509f691 *R/sample_posterior_R.R
df9158fccab9d2b530b000f533456835 *R/utilities.R
f1fe33e9c3bc26a290299736f3e1c380 *R/wallinga_teunis.R
5b441241d303e300a5fab14b0fdeb6e3 *README.md
3e3fba3c6ee2b93954204527440a580d *build/vignette.rds
68619699f6b16b43b2d9b379caa70501 *data/Flu1918.rda
9f74237e7f178ca4b7876c9d13d6632c *data/Flu2009.rda
49d669ea19631f539735dd10dce6e8db *data/Measles1861.rda
e37820e09dc8e1562158e2d0e89ea74a *data/MockRotavirus.rda
1042374d76b11e087b4a99bf4800ab4b *data/SARS2003.rda
36af390bb55749a858d148a2c9a8ab51 *data/Smallpox1972.rda
78c262e30fcb360a8b260155dfbf38ad *data/flu_2009_NYC_school.rda
2da2331dbb07ed211b566ac6f3e41291 *data/mers_2014_15.rda
2c74e341c607bf953031c29661180b00 *inst/doc/demo.R
81b2d9389683138b6ad61e60584090fc *inst/doc/demo.Rmd
8f1848a02b616ee8102add8d6e16aa6e *inst/doc/demo.html
d8514c592ba489ff73e58a4a0fe3f788 *man/DiscrSI.Rd
2d7c57a8db1ce0b5dc7a85797fba079f *man/EstimateR.Rd
30a807f078ea0a5790f9c646c78f2e74 *man/Flu1918.Rd
a1827e43acebcca732bdd85e36a1df10 *man/Flu2009.Rd
375b364a1aadd6f20a71b84e534fb221 *man/Measles1861.Rd
b8e0d3f15928722ed25b827479254efa *man/MockRotavirus.Rd
97013a37e46ee151c02c7a4efb1e7c7f *man/OverallInfectivity.Rd
5ece481a0aec1813a4ad3651490df654 *man/SARS2003.Rd
b119a72a7493604bf7ed87e05d50968e *man/Smallpox1972.Rd
86f6ff0c42e8592bbc9ea516c01a7b28 *man/WT.Rd
8016e7e5f59323040af4dba993e6cf45 *man/check_cdt_samples_convergence.Rd
ba5eed5945782257bb47fec67600f8cc *man/coarse2estim.Rd
56c5cf9f2ace45c6681da600bb9528ed *man/discr_si.Rd
2ce2242b32dc45c5cd8577620260c807 *man/estimate_R.Rd
c3d3275bd5c6e7e1efd03f8c7ef11ea0 *man/estimate_R_plots.Rd
b3a2d38a6451082adab3d588c2626499 *man/flu_2009_NYC_school.Rd
7b7cc144b00739df2d6ca953817e028d *man/init_mcmc_params.Rd
6939c291c635964cdb3fef38442b7c3f *man/make_config.Rd
d5ccf30a73149b3c41bb5751a83ca776 *man/make_mcmc_control.Rd
bcfd73e688d3342ac50e1accedc7a08a *man/mers_2014_15.Rd
e7f5972468c6da2d51683c7ed014d367 *man/overall_infectivity.Rd
a9d24e157df30958790274710fed0fdb *man/plot.estimate_R.Rd
1f9f6f9a50bd32b43b083027f9821924 *man/sample_posterior_R.Rd
ad0ecdd09be0a7d6866767a93d202bc7 *man/wallinga_teunis.Rd
8e467a30635417061a9a5020fdd6e923 *tests/expected_output/Example1.rda
e29f5ecd8e133136e7554b776880b53e *tests/expected_output/Example2.rda
cd4615b6d5e669bff0fcab62fa4356c5 *tests/expected_output/Example3.rda
9405b904bb90f4d844bcd39ef57f31ad *tests/expected_output/Example4.rda
37455b724fc4126f1b8305cc5c05f444 *tests/figs/deps.txt
c84213bf8909db39ac93ff3457a32bb5 *tests/figs/flu2009-incidence-import.svg
05ab9e3643bef13d43c8a57b79713af1 *tests/figs/flu2009-instantaneous-no-legend.svg
64bf2e7d8f65bcb90316f1e1b5627eed *tests/figs/flu2009-rc.svg
f3c2022622c4d579060d6f74351ad1a8 *tests/figs/flu2009-ri.svg
a4cc253cd0d848eb65a142cc94578348 *tests/figs/flu2009-si.svg
911a6159d25e5e8bae3715ba48c31328 *tests/testthat.R
a75bad01e96068da54b2c418bb813a00 *tests/testthat/test-estimate_R.R
51a3b62e3bf172594a2deef2812349c2 *tests/testthat/test-plot.R
a6a04245f0486340c0bf82e675f62c17 *tests/testthat/test-stample_posterior_R.R
81b2d9389683138b6ad61e60584090fc *vignettes/demo.Rmd
