63356f7ba9a710718c47411137b64dd2 *DESCRIPTION
7166cadb8be2ad8c928b21a53d7b263e *NAMESPACE
6cd852438a63b4aebc1d1c7dc41f3841 *R/AM.R
db9f9e677c4cd39f1fedeaf4020561b6 *R/FPR4AM.R
c23bee8a0e5f6c54a6d008273dedb507 *R/GenomicRel.R
554d009ecb870928cf4750a71251a2b8 *R/OpenGUI.R
ac1f24f0b8b8cca0680b67620d3845db *R/RcppExports.R
6f66b9b4ec8d05072d5506b7a7da23fa *R/ReadMap.R
b0d6c042ec7b3d9f79fbd594406b608f *R/ReadMarker.R
e3dde42e5de767aab17346032855d259 *R/ReadPheno.R
23746c0e2f363798cb2febfdc875be24 *R/ReadZmat.R
b3eff6ddc156437284e3323d4b347fdb *R/ReshapeM.R
433b4e74897996b8418a781f0c9a0160 *R/build_design_matrix.R
fce774f1c5027b00465a0d8cd60ef405 *R/calcMMt.R
b10843a81772dc47d2460995be1f1af6 *R/calcVC.R
153946f077603739410614f00a9ae14e *R/calc_extBIC.R
3735e68d60df032a69d772f590d51ee1 *R/calculateH.R
45837f808431731052fb900b39b41853 *R/calculateMMt.R
be74f16d819a9d8e9420decce4c9ca5b *R/calculateMMt_sqrt_and_sqrtinv.R
9ecf813a2b6ed1e7a410f148f5aab634 *R/calculateP.R
15a02c0799c859c87895ac1e89e388d2 *R/calculate_a_and_vara.R
f69389ecf390c439f05bface5584fe51 *R/calculate_reduced_a.R
176203f42c2b76ed252506190edf9e1d *R/calculate_reduced_vara.R
6742470835146bea6fec13b7e83b36f8 *R/check_for_NA_in_trait.R
c11fed29580734e417af2960d60a7fe2 *R/check_inputs.R
72e9b877ed0d6c5838498f7e4cb12ae3 *R/check_inputs_mlam.R
e335652d1541cb84bc5c9901250d61d1 *R/constructX.R
4b15ab796149cbc11dd5e94890b625e3 *R/create_ascii.R
090e12fcc55d0bfcc26bf39cae1d735c *R/doquiet.R
7b644a74d523ad83df85bb4e701efb59 *R/emma_MLE.R
e9d50d5abdd22d95c75c5d45f2c58846 *R/emma_REMLE.R
23624d097b846814931f4dbb4adefd2e *R/emma_delta_ML_LL_w_Z.R
26743200875d2cfce6e9e70a5b60bdb8 *R/emma_delta_ML_LL_wo_Z.R
284ecaccd1d56b75ec64de04b4520223 *R/emma_delta_ML_dLL_w_Z.R
37ac9e69e05c964a31f848b7eee5f212 *R/emma_delta_REML_LL_w_Z.R
57f09738d8d066ea558a411342c11e40 *R/emma_delta_REML_dLL_w_Z.R
61cb7b7f91f72a33b1917a54b8cbd2b7 *R/emma_eigen_L_w_Z.R
b6adca4749872a53b6018dd2b1ffb148 *R/emma_eigen_L_wo_Z.R
143d32a7c02b97cd61127cd68d6f8bb7 *R/emma_eigen_R_w_Z.R
e5a3c0425fa9bc7334b8e2c4e8117539 *R/emma_eigen_R_wo_Z.R
5db0748c49aced2b57f9ca4e1d61ad3c *R/emma_misc.R
7f4029c7c40aeefc4f7d6729cfe78241 *R/extract_geno.R
81aff605f8ce51f01a68fad42b5147ad *R/find_qtl.R
dd0ab0b2c984824b4196fb3e38e83d88 *R/form_results.R
04dc749ce9df2a5da247afbbc4d8f83f *R/fullpath.R
d6c8679894a4e32850f74cc10cde4b36 *R/onAttach.R
dea6b490dca487416f28302496c7a73a *R/print_final.R
1b73f76459a8c33f87dc74eea985f9a0 *R/print_header.R
acfa4a3bb12384cf3a3b1cc883817a48 *R/print_results.R
56413170d750c453efe1386d13feea18 *R/print_title.R
f21688c04be6297a8eca44ed8700ddbc *R/summary_am.R
a842e35dbafc23ff8d61b9ff293aca77 *inst/extdata/Z.txt
a66eacce015cbf6558499e0d383ea2b8 *inst/extdata/geno.ped
e11864602703640fd89f78b59ee0d71e *inst/extdata/geno.txt
aa8433d52ce346aad880db7ee8cec704 *inst/extdata/map.txt
375a5c8003499b2779bfb1035d5764dc *inst/extdata/pheno.txt
bdb41ddf9bb2ff0fead3ef71fef66d25 *inst/shiny_app/app.R
f1f70b900f4e32cbf0a8a27135e9e25d *inst/shiny_app/css.css
1d8b41ff9898ad114aabf6bec515c92e *inst/shiny_app/help.html
3721d46912642f6dbc0773fe61324c33 *inst/shiny_app/www/images/HomeScreen.jpg
811a4dd80ab95b030fcf998fd1dc2fab *inst/shiny_app/www/images/Zmat_banner.jpg
baa765477d5e074add45b543b5ed5143 *inst/shiny_app/www/images/analyse_banner.jpg
9cfd01244dd5d1ac4690870f17206e09 *inst/shiny_app/www/images/findings_banner.jpg
300d8c024160302a266f0a2cbe87db42 *inst/shiny_app/www/images/logo.jpg
09f9debfbaed261b36247b475212fe9a *inst/shiny_app/www/images/map_banner.jpg
57d99ba760d893bc378a4294c256bdc4 *inst/shiny_app/www/images/marker_banner.jpg
8158634e700eb29b00403d995dbb0b62 *inst/shiny_app/www/images/pheno_banner.jpg
b4a94b786bffe582cf5824950a8596f4 *inst/shiny_app/www/loading.gif
4c01c14c60d3d46fc0bfdbf4e5ae9f8d *man/AM.Rd
6ac1ac2b6c4594297de02a768d362979 *man/Eagle-package.Rd
392f8b0deb87e5ba3b5f4d22d6ca7a5e *man/FPR4AM.Rd
13dc3cde209c1d91db4af244f5828a64 *man/OpenGUI.Rd
6c4ed8102849071ee966382532796e70 *man/ReadMap.Rd
9609ddc20095a63400074b790e355549 *man/ReadMarker.Rd
df2b72867f1a63170de00becf8a8411d *man/ReadPheno.Rd
79c277ba62f47b74ef86931b27d172ad *man/ReadZmat.Rd
17a68ab692075e56fa3df82294c09385 *man/SummaryAM.Rd
52f5d9d15bf451419c09568293f73a87 *src/CreateASCIInospace.cpp
9177c3feafe6a6e3094805950a043211 *src/CreateASCIInospace_PLINK.cpp
67bb2ca24873a9725ed76b0af8eb70c9 *src/Eagle.h
3d71d72027517b688cc205a34e1a68e4 *src/Makevars
42af89a177096de8184606dd2cc4971b *src/Makevars.win
fd8490d767793da2e5e0aaf567403156 *src/RcppExports.cpp
e80aa5241c4d16dbab489c1bb92412aa *src/ReadBlock.cpp
5121989c2dd7f2c51f180a0d183b9027 *src/ReshapeM_rcpp.cpp
7a90e61cc1bdd80d8cc61eec553c2a43 *src/calculateMMt_rcpp.cpp
bb029d87009538a9ee4e5e01741225a5 *src/calculate_a_and_vara_rcpp.cpp
2f09e51139cedd92d8350b77e23e14d7 *src/calculate_reduced_a_rcpp.cpp
73e6db323679d903f185aebd22023e69 *src/createM_ASCII_rcpp.cpp
0753f0fe9ff2ac2700af1f9050307977 *src/createM_ASCII_rcpp.h
8e957f003877c11985b7f709a2592107 *src/createMt_ASCII_rcpp.cpp
6e143f1c043c81cd0b8603233b4e4c6b *src/extract_geno_rcpp.cpp
937740e85e393ff1394b19099e314ec0 *src/fasttimer.cpp
f9bb6f36ac59a0b500d73e9fa9d8cec3 *src/getNumColumns.cpp
5d894fd8802b8eda6fac5500bfd2af04 *src/getNumRows.cpp
48b25116e5fe8223464fe563431cb389 *src/getRowColumn.cpp
8ab68a6b778569e106f0469f20f037fa *src/readblock.h
55812e46999a66eebb6308ae9b2d1bd6 *src/removeColumn.cpp
21c28b10981edb63fb9a947675143433 *src/removeRow.cpp
