bccb48e69cbd46e4c4c0fcaf2a355759 *DESCRIPTION
573b3159595beb39e3c41d3216408563 *NAMESPACE
2a01cfd0343350b01c6488931f53a728 *R/AllClass.R
6e225a5f9c3fbd754d1f12f841fbbc1f *R/RcppExports.R
e4be0ba607c79fad498fc034dbc20365 *R/addID.R
cd86cd1018d012c3a5d3985f2ff6fb24 *R/chromR-method.R
f68e983a598fe45a5c2bdd9e550d51f0 *R/chromR_functions.R
cba0b304a8e16bee0c9182d7616bced9 *R/chromR_to_vcfR.R
8e22d42401e45a93f9b97b54f7cd2558 *R/chromo_plot.R
3a69d48b309ef85376da9888d983b023 *R/create_chromR.R
6f45c217da7622d33970c001df58d001 *R/drplot.R
a0e60081946770f83170000b3aeeb3db *R/extract_gt.R
66c2fee68a972271bca83f8f280f1603 *R/fasta_output.R
ab9309369d84764be99be278d022d601 *R/genotype_matrix_functions.R
e2d56e1dbe386424bfe7679c27ecf4b5 *R/heatmap_bp.R
027df8b478350668fa94fd234355dec3 *R/io_vcfR.R
fbde718a8859a58ad49abffb33069d51 *R/is_het.R
c8c9c7f318a6838df588a557d82cca1c *R/maf.R
e7850040eab2dd52fe1c613c769c795a *R/onUnload.R
b6e1c6057d5cf7c8779d19b810155f52 *R/proc_chromR.R
4157fbb30db699ee5fcdfd8e372ddd52 *R/query_gt.R
406b6f43c00267bc3470249abd92ae1c *R/ranking.R
aacfe2ae858cb9ea8e1ebbd5206b8d03 *R/sandbox.R
a5615a7fafe9213cb74b4142a58631e6 *R/summary_tables.R
de537df6daf48086689c28be24b2c749 *R/vcfR-method.R
d49027584721b1eb2caf5149d3dc64f2 *R/vcfR.R
1b9a43e7d6bfe508640c197e24ea4df6 *R/vcfR2DNAbin.R
cf965a3d9a8f55afd1e64ba312804fd7 *R/vcfR_conversion.R
9ac5ff0c92c329b80a9fef26df321aa1 *R/vcfR_example.R
966b570a822f9451add36ac8480ffbc6 *R/vcfR_test.R
c3cd45ff4c0b7b2dc41cd254d1cdd050 *R/vcfR_to_tidy_functions.R
c4edea0048cf9350eeeea22e9860db11 *R/windowing.R
7c7cb65488e5230113f588e2dcfc0452 *README.md
f78a12f12631b6fe51a5e75fe9fdc15a *build/vignette.rds
fcdd17a1c8b7adb4d72c32b41c780ed6 *cleanup
a59634d93a55f32fec23400329223c18 *data/vcfR_example.rdata
f7ca2c9958e18863824a4ed43473f546 *data/vcfR_test.RData
48f535f147b6eda6fedf943a9ceefa34 *inst/CITATION
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e101377564d3820d95f77c16af49a12b *inst/doc/filtering_data.R
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3a77bef45b8f81433fc42e0e7a7c899d *inst/doc/filtering_data.html
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12b05d52cdf643c811356e1107760fec *inst/doc/intro_to_vcfR.Rmd
25d7be293f86816f0c6cc25628ff1039 *inst/doc/intro_to_vcfR.html
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d30282054f651f0d2b55f69d4f20b274 *inst/doc/sequence_coverage.R
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4457178555bec060183d167d427fbf18 *inst/doc/visualization_1.R
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a4cbb9db4755d627878baef07309185e *inst/doc/visualization_2.R
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2285475aa7667d5c63108eed83cee0a1 *man/AD_frequency.Rd
4d1a46027253b6e1a99ee1dbfa958b0d *man/addID.Rd
5c0e3aee148cbe8ed7d85a1ba7db0f6c *man/chromR-class.Rd
4c3277c60e7e62e7cc3d1363ac625533 *man/chromR-method.Rd
3748f781a2001005a9cd1761b522bd54 *man/chromR_functions.Rd
e973cc00da0d9d14a3bdb0ea7c8f54b3 *man/chrom_to_vcfR.Rd
43ff9ca9e676987cd1a505f9c47b50d2 *man/chromo_plot.Rd
44c51955c63a5fe49bb783eb231798dd *man/create_chromR.Rd
63c64bc029dad26aef61d6ca42f95c4c *man/drplot.Rd
5f93b3526d00feaf6cc19656a34e2721 *man/extract_gt.Rd
16d16bf51ac013e61a0d921b811bc012 *man/fasta_output.Rd
0d9b025ed29e0f3d68cee0adeb425c87 *man/genotype_matrix.Rd
62bdff8d055b4a110c7a7eae606d93ef *man/heatmap_bp.Rd
92d72ec87ffd8c78a0fa6c53e60e0027 *man/io_vcfR.Rd
c172540158579d55e12adc477098afe5 *man/is_het.Rd
3065292aaa5eb1adffca8fb5f4321dde *man/maf.Rd
8079dad491a060e927b2a92922ce3a38 *man/pipe.Rd
d05939ecd0f125f5c5cdb3b0a144fcec *man/proc_chromR.Rd
d3d0af9dc7779a40ba3eae24ae735a2d *man/query_gt.Rd
43c282e1010c7ad77d1b304b161e25bd *man/ranking.Rd
27049ba217255d24d7c6220e6a4ec000 *man/summary_tables.Rd
4f6b04996690b58b70f8b55356bfd651 *man/vcfR-class.Rd
2a7747101d86ed0c11d0c80472055dc2 *man/vcfR-method.Rd
c83eb7a129dfd41e565909d74e7fb7e8 *man/vcfR.Rd
fcea8010796b42679908705057335d88 *man/vcfR2DNAbin.Rd
8d312682df5ff66e25789c7ca88247e4 *man/vcfR_conversion.Rd
ddb63a662b864623f0f9978cddae66c8 *man/vcfR_example.Rd
9c3e9487a0fa0b6da14361149e1c12a3 *man/vcfR_test.Rd
278b275bbd6d87a2262e7b1ff9aa7410 *man/vcfR_to_tidy_conversion.Rd
a3dff09d2bdd442c0071179383fbbe3d *man/windowing.Rd
b475a70e847f05fbdedc56689a949015 *src/Makevars
e4fff8efe7ec58b48c06d3019d0fdb71 *src/Makevars.win
b2091b3b3e15ad146f69fd2627cd3e94 *src/NM2winNM.cpp
5ffd846896b6fdf796aa462d96dfefcf *src/RcppExports.cpp
8ebea93a385ee9d7d2b6283f1c9e5a41 *src/ad_frequency.cpp
ee352039bd268982edf242b3e983f7f0 *src/extractGT2NM.cpp
289159dec39137dd1fa8f19ca62578a9 *src/gt_to_popsum.cpp
79eb30075bc8289c8f5a07f96dcaba42 *src/pair_sort.cpp
5ec7bc48998b4262ad6adf465d6078a5 *src/rank_variants.cpp
2d50291243b62c05df12db5a30926fbf *src/seq_to_rects.cpp
c37ca1196da40324c016f7c895d0d823 *src/var_window.cpp
2ba366d28aba041e50119e1cef6f6940 *src/vcfRCommon.cpp
d857126a23008e6ee0f460a2412e4c45 *src/vcfRCommon.h
cbbd38a6b4d5496a94e4b9fe4598b551 *src/vcf_io.cpp
0539dd71a88cf730c26b172efda90aaf *tests/testthat.R
03a7b1ba2558980f52858043bcf9a00b *tests/testthat/test_1_vcf.R
550a95c9cc73d0cd8ed6c45b597440b7 *tests/testthat/test_2_chromR.R
9fd2ca650739445a1bdabe5c94f16515 *tests/testthat/test_3_extract_gt.R
3c2473f7feab356a6da232716ac10db1 *tests/testthat/test_4_vcfR2DNAbin.R
9f340ea590c77a6ee53469a4c42f4ca4 *tests/testthat/test_ad_frequency.R
f60bca3e8f444e91b80738a3f0cfe657 *tests/testthat/test_addID.R
9da3f55f034801ea9263145e63223267 *tests/testthat/test_chromR_method.R
0de35441f362dc69cf17b5a6546cc63d *tests/testthat/test_chromo_plot.R
9c36918a84993b4871ae06b066330521 *tests/testthat/test_chromoqc.R
8ba39baa345a7b01bab3ce2cf3a4caed *tests/testthat/test_conversion.R
93d6020e5d7781fe7f58f34b91c4f2ca *tests/testthat/test_drplot.R
4a1ebe80794a015b69b4b3007d90d529 *tests/testthat/test_genotype_matrix_functions.R
6ca2012c895685678b6c7045da94c6bd *tests/testthat/test_heatmapbp.R
18cebcf62983153c090ecd3159283659 *tests/testthat/test_io.R
8f06e15a4d7376b04fa1c4b726905e77 *tests/testthat/test_is_het.R
28d6ddbd705117e7aa1af59a4e694edb *tests/testthat/test_maf.R
e7cf3c2216ce8647a35558d4bab2509a *tests/testthat/test_rank_variants.R
75c84f5b6c98bdb281c569b50e69a4de *tests/testthat/test_var_window.R
97eed054a6e9a3ed38d7493edfe299e3 *tests/testthat/test_vcfR_methods.R
bcbb83b1f57bc7d00c22ff5e64801759 *tests/testthat/test_vcfRtidy.R
9bc6b61de795459cca3f8f7cba806f0b *tests/testthat/test_windowing.R
03a5f43ce6b1b2c8b183e7af3d48fb47 *vignettes/converting_data.Rmd
9e68aef79eceabdad75daadd453b7c4a *vignettes/filtering_data.Rmd
12b05d52cdf643c811356e1107760fec *vignettes/intro_to_vcfR.Rmd
75659f3d916cfa1658a4f64ab45a5749 *vignettes/ranking_data.Rmd
ff9d69835a30215c0b90a94554d53117 *vignettes/sequence_coverage.Rmd
3cdf661081f2c22e775deaa33274b68f *vignettes/vcfR_flowchart.dia
414b8298b74306d9d298e6315b23b00e *vignettes/vcfR_flowchart.png
ce4dab18c764e2e306ddb4ba6b151a8d *vignettes/vcf_data.Rmd
b5100d4b9561c0f99db171ee868d941c *vignettes/visualization_1.Rmd
693726bbdee8c5bceb709d9553747227 *vignettes/visualization_2.Rmd
