37678f4f66e84831ab9dac03f0c2435a *DESCRIPTION
b373888d644f605aa6f7a7fd7395878b *NAMESPACE
661e41ada4743ae324eed0a1f6ad5043 *NEWS
fd90bd9fc307e94843c5268a6f1cbe02 *R/blockedReact.R
92fff0bf07dc6173ecc30d9ad6476768 *R/bracket_pairs.R
d378c30f7329d52306ebbc390fbb871c *R/ceilValues.R
a151620aa8243c6385df62e23a9128d1 *R/changeBounds.R
dd58b287ec905455ddf17b72f285f3ba *R/changeGPR.R
0c98a83bdf70a67c724f85b51401e9f5 *R/changeObjFunc.R
9b5422d8de4f6edc0914b5ac3988803b *R/checkDefaultMethod.R
cbbb5457aa45599c4d4e5cc3c1dc8b28 *R/checkOptSol.R
6645ec49baf1eae161a0a43a05b56067 *R/checkReactId.R
d24115becb27e92e69c2192384ba1181 *R/check_brackets.R
0754fc7d3332f0b92774937ec76c6e9f *R/checksolClass.R
5139390da05b9b109d1c09046ee00273 *R/createReactionString.R
a63bd0215fa615f8a23931656cceba2c *R/deadEndMetabolite.R
5b74594d9ce8836d59e0b48e81296863 *R/doInRound.R
f689738543df9c370452722bcbf2b7d9 *R/doubleFluxDel.R
57e6c502e06953a38a6459dd8c61e3d8 *R/doubleGeneDel.R
4b453f715e84a9106fed0833df8372e6 *R/doubleReact.R
cf01607ada79f75b1d8fd5e790716acf *R/findExchReact.R
53debde87649f5429633093ad70efe46 *R/floorValues.R
e77f26a9cc755a5a863d9abbd26aee2f *R/fluxDistributionClass.R
a9193715f14dc837aef562513af538b3 *R/fluxVar.R
22bfe84ac95f574746304dcd22c78cd3 *R/geneDel.R
eb387859d70bd6edd69f02e38692c4c7 *R/geneDeletion.R
7bede95bb10f090331ccdb6946294681 *R/generics.R
896ca74c0da9032c865d1a6a1676a80a *R/mod2irrev.R
f31c96cde937ef7c6b66676f12b65fbc *R/modelorg2text.R
82e20d1abdcac1f5b9cc7d02dae639e5 *R/modelorg2tsv.R
a1e84f5f3489c35adf4c638f2bea882b *R/modelorgClass.R
aad8b1ef91fe84b46cfd32e44c28b957 *R/modelorg_irrevClass.R
3f5b099bb1c01a7ad62b1cbc5c12a88a *R/multiDel.R
ea5408e168d157e582bd703077813d1a *R/oneFluxDel.R
d283ca725588f16f941a8c7bc6661582 *R/oneGeneDel.R
166bd809769d6ec732ef1142f1f5ee1c *R/onlyChangeGPR.R
d55bb45b70150001c4a03b2790d0669d *R/onlyCheckGPR.R
73ec1be3bd2d10ac934a90543c1b8548 *R/optObjClass.R
e9ce5560b7797982acc660f96f6d0649 *R/optObj_basicfunc.R
a221318fe782effa4750575a3eb46bc4 *R/optObj_clpClass.R
e16cd6a5a202ac3513c2f4893e37bb0a *R/optObj_cplexClass.R
894d3c901e1218372d86f56a75c22690 *R/optObj_glpkClass.R
95043013ce1fc16181ef83a505000183 *R/optObj_lpSolveAPIClass.R
9e95bb654bec540ad4d74ecaca97e963 *R/optObj_lpSolveAPIcompat.R
b12aef176c9cefe1d63a69585a03fa8c *R/optimizer.R
b0feb17f61ee0e5b11ddb1e2bdd955a4 *R/optsolClass.R
b369670aecfc4d8bd9b16f5a4418b109 *R/optsol_blockedReactClass.R
95b5e00c308f05058de620ac5ae6b889 *R/optsol_doublefluxdelClass.R
210944cc380f51c7fe0bd50a736b10d4 *R/optsol_doublegenedelClass.R
51cbd10eaa3b08e4c893e343e38ead93 *R/optsol_fluxVarClass.R
2ddd0905c3d43059b624ce47fc9eb125 *R/optsol_fluxdelClass.R
0e253c685412eaec5aeed8b6e4e4bf17 *R/optsol_genedelClass.R
45ccda12d0985b79ede7ae3ba1692f99 *R/optsol_robAnaClass.R
7a180c26ae2af5f04b6e8500f997990f *R/optsol_simpleFBAClass.R
5d0dd5b930854f7b1ef3e50394c20068 *R/parseBoolean.R
5626d05c0900d886e07ae8dd4f7f1de9 *R/ppProcClass.R
165d17901e0bcfe7485dff454e98c9ee *R/ppProcessing.R
56783c9a2709bed8edb478dcf4dc1184 *R/prepProbObj.R
c4435a8738d6844dff70c312e64ba3c2 *R/prepareSubSysMatrix.R
bf80e92984b283318205446dec47c855 *R/printLogComment.R
3d510f068f19a2c081e7cfb78959dca8 *R/printNamedList.R
ec047124ac61f1fcb13ffa89326540b4 *R/printObjFunc.R
06fb77693db3927a826aa2eab7007a16 *R/progress.R
99d5337fb3a1fff1fc760d665f8d7f96 *R/reactIdClass.R
fa515bb3b9d8eb4049336d6b559a7a94 *R/readTEXTmod.R
0cf98ce434a99ccf6a677c25849e6b2f *R/readTSVmod.R
1f6a5c60d8be9d8caadc0d40b43f1b1d *R/reassignFwBwMatch.R
a52ada0c49b86d55979be496f83a283c *R/rmReact.R
3e08198703e69249065ad3328a670033 *R/robAna.R
9918af0e428c05630fc8dc1a01afcc75 *R/settings.R
98a67cdc0006e12929c7c723eddc1bae *R/simpleFBA.R
a7e8fbac129298dbdd724b372b9a2dcc *R/singletonMetabolite.R
954161e8ed953f876cd77e3b33881eec *R/sybilErrorClass.R
9f410cff11dc9b8311979ca358bc4857 *R/sybilLogClass.R
17dfa03ea999c67525285318d1e14f31 *R/sybilStack.R
db2ce32b5551e11e9acaf855a5a06142 *R/validmodelorg.R
dd19017b88c3fba753283baab9491104 *R/validoptsol.R
5485d688730c8011d74753943e8431d6 *R/validreactId.R
ecd135c0e3b29c0fc13dac96669b52ab *R/ypd.R
072f6cd519fa13ec753a008768f188aa *R/zzz.R
8447a040c5a7d2587ccb3e151cc3afcf *data/Ec_core.RData
cf21b00671d9f631de882673229e2382 *inst/doc/optsol.pdf
6fa7b4476bbb22e5af5cd3e6fe8cc3bf *inst/doc/simpleFBA.pdf
4b6fe80803a89a69a07b9dd431d1b3ff *inst/doc/sybil.Rnw
9028aadff03e62e81d978cbb6c308eb4 *inst/doc/sybil.pdf
57349ddd1c5292698b4f40828fb0a4c8 *inst/extdata/Ec_core_desc.tsv
a087d5c12df926906688674ba133e6a9 *inst/extdata/Ec_core_met.tsv
5e592ee880a444834fca2de9f320367a *inst/extdata/Ec_core_react.tsv
85212a39318ffd14ec23b85429f02540 *inst/extdata/rbc.tsv
c94a9ca15e74ec5de8c7be9976faeaed *man/Ec_core.Rd
c99819a0b2d4d06ae62ccb28505a7c49 *man/SYBIL_SETTINGS.Rd
1625a611cd23edf74f904bc043b8a7fe *man/blockedReact.Rd
ebca3e643e05683d7bd505d601916c24 *man/changeBounds.Rd
a2890084575f596d8f4b3269c8a9cd49 *man/changeGPR.Rd
dd9539764bc24f7e01b535ca482553c4 *man/changeObjFunc.Rd
23f1bf593342f28ab0c596864da7b5eb *man/checkDefaultMethod.Rd
781cb4cbacdc65c7ecdf0abc4e3348ad *man/checkOptSol.Rd
19975268780fd3a564c518c8e2e15cac *man/checkReactId.Rd
6e1521ad618bd9701069b04a3e4e780c *man/checksol-class.Rd
e6381828792d8ade9a441cfe1ab0b63d *man/doubleFluxDel.Rd
f0ca6376fbbbabac875425dea3b4e4ca *man/doubleGeneDel.Rd
500a45045d381ccdb9af80e4e6911ae1 *man/doubleReact.Rd
b231c9d6fe204443c2f26a0bb7364564 *man/findExchReact.Rd
f939904f1825f257cebcbbe6a380cd3b *man/fluxDistribution-class.Rd
aff9ef1040cf93755b8b938037a36ebe *man/fluxVar.Rd
0d30e7b8a8bf27d36d9bfd9dbcd56b4d *man/geneDel.Rd
cda4de22e19f90d44ecba738d7609225 *man/geneDeletion.Rd
1739bb6798a683fa6f333e963cd1ef76 *man/mod2irrev.Rd
5ae8270163f7786c5ac7e3023d2286b6 *man/modelorg-class.Rd
28df592b5402b84e6b451c7c854e8d34 *man/modelorg2tsv.Rd
57f4ae694278958786a06910a9090639 *man/modelorg_irrev-class.Rd
48e9782fff1d7738e191fc9178b978eb *man/multiDel.Rd
fef4c48c7faad4e84bd6f0730027a090 *man/oneFluxDel.Rd
42be24cf834b7146bd447f0b9a58107f *man/oneGeneDel.Rd
36473471e1f8f96fc9e1b3aeb170f3b8 *man/onlyChangeGPR.Rd
d6ac7f0d2b36f8be8d30bdb6139e5435 *man/onlyCheckGPR.Rd
94fd855b8d39f745292dff8e4cb2a635 *man/optObj-class.Rd
af07ac597916e89a969deb56e0d88984 *man/optObj_clp-class.Rd
424a6bd4a0125a9295de3c2ab0e62be3 *man/optObj_cplex-class.Rd
86bd45a35ca77705644db2e3346a4784 *man/optObj_glpk-class.Rd
fb92592a1b6e53e10c68ead6ca81e080 *man/optObj_lpSolveAPI-class.Rd
455d5d41f8a506716a99d6b079872ec5 *man/optimizer.Rd
80fdf8031aa9b0a95052aae099c236de *man/optsol-class.Rd
211fc15361a4aba03cab08fa8a37a3a1 *man/optsol_blockedReact-class.Rd
d84e6b8e71bad43c02ff082786e44eb6 *man/optsol_doublefluxdel-class.Rd
b926921e43c82a7854973b5dc04b2766 *man/optsol_doublegenedel-class.Rd
fab6c6ab9f62c17b5f3cf218554ab9e0 *man/optsol_fluxVar-class.Rd
52fcc305a3cc0de4d0c0e10244f25820 *man/optsol_fluxdel-class.Rd
ad6ade81fee3316ed86f5112befb6e72 *man/optsol_genedel-class.Rd
1566e6d01d33874e442218f71b8d4025 *man/optsol_robAna-class.Rd
f726853e2d17772f338aa9d801c1a8ed *man/optsol_simpleFBA-class.Rd
3a04ffcad9edc7c59fd70c8a53c98513 *man/ppProc-class.Rd
1f6b26b59aecffa5fcb9e5adb5a79d0b *man/prepProbObj.Rd
1548fceea593ad19fea89155b68fd988 *man/printObjFunc.Rd
714428d10704b17877c174953976f37e *man/reactId-class.Rd
07247518113b872baa5eac64af24cf83 *man/readTSVmod.Rd
352a2a5379dbc3996d1671e8211ca59e *man/rmReact.Rd
28967b6c1f7e0461dd47a8b236886cc7 *man/robAna.Rd
1da328350c779e4a87c60a0866a8a22c *man/simpleFBA.Rd
94bd2a540bb4bb58f90c98342ae6517c *man/sybil-internal.Rd
5ccd127c1604ff4dbf1d518c732be81a *man/sybil-package.Rd
98b176864010ecc707365e9e8faf88aa *man/sybilError-class.Rd
ded77d793f5d05db65c07ec9999497f1 *man/sybilLog-class.Rd
64b347beff6c25c402d2c6b9c1a0159c *man/sybilStack.Rd
cea331aefadefe7bd32f98a2180be635 *man/ypd.Rd
da5c6a7ec67524e81a79b9435f407c34 *vignettes/net-crop.pdf
4b6fe80803a89a69a07b9dd431d1b3ff *vignettes/sybil.Rnw
06298923dea991e249bb53e22ba0d1b9 *vignettes/sybil.bib
