0c8b8a3ffdfb2f412d7954c66d5720f8 *DESCRIPTION
b546e947bcc120e05146bdc242cb1605 *NAMESPACE
37475d262e58798a5ea841dace92dfe0 *NEWS
a750b8bf42c88d336ba9a067b3bfb8a2 *R/HMMplot.R
e18ecd13c7b3d96672d0d67803c4c49d *R/RcppExports.R
a5f0ebacdceb57a21cbd92815e3899d3 *R/SSPlotter.R
165a02f81c29866de258f8e32e010ec9 *R/biofam3c.R
0c9fecc423837951ad97a869cda2b0a8 *R/build_hmm.R
ea7735fedf6f41e771b50a14bfa5d89b *R/build_lcm.R
caede8c963095be257d8228d1c52e95e *R/build_mhmm.R
c42d34b5f5dd9d77c5c600f824bce860 *R/build_mm.R
85fc667be1857e2da7fbc63f3bcb7e91 *R/build_mmm.R
3da8086738691f70003b857cd1959a03 *R/colorpalette.R
c501731291a9aa14d341e60442cbe0fd *R/combine_models.R
8b2c921c5c083c689c650cf97b0f2a83 *R/estimate_coef.R
a655040e14769b62b237b26ab448b305 *R/fit_model.R
77d4f3b6bfce8a721c926b971c9c6fb8 *R/forwardBackward.R
1fa18a37cc6f824f726ae1ee465b8f92 *R/gridplot.R
934d14564f23f13ab0d254472fc943cf *R/help_data.R
38c2ff380aed5029a23c4f54e8327e4c *R/hidden_paths.R
e9a202767bc83aebed76a38e87798dfe *R/hmm_biofam.R
ab2e784177d1d691fabad95439319d17 *R/hmm_mvad.R
496c8ac7809e2bac50d5a43cf376288e *R/import_seqdef.R
707cca9dfdea084fb6902fb026c1c5cb *R/isColor.R
a70385523cf2a6428faaba87240849d3 *R/logLik.hmm.R
f6d6e1ddb72f66ac43fd7a1d3c119a43 *R/logLik.mhmm.R
a024a2564faa04452e983e2995d088c6 *R/mHMMplotgrid.R
afb9d838a6d3a84a30a06215db5fc5fe *R/mHMMplotint.R
982436a14dae3c5dfc1b6be0b2d1b473 *R/mc_to_sc.R
360c359f97d4f3bb0bf02e02676eccb1 *R/mc_to_sc_data.R
f678fdd2298abadf0ef822e95f1ba3cb *R/mhmm_biofam.R
d3982e5832836ccf9c5cc1fbc22f96db *R/mhmm_mvad.R
d3d96313fc88f176e1ffa08770280a16 *R/mssplot.R
9e7bfbc33088ae0338414d489aa09426 *R/plot.hmm.R
fca2de08ac8bccd48e863d612c64a9b6 *R/plot.igraph2.R
281352471ed39c98bad40f49730becc2 *R/plot.mhmm.R
5e6374a1342f6af76df63a5edb080818 *R/plot.ssp.R
01aadc3edf15fa027e5786dc5a219cc7 *R/plot_colors.R
fb9f500a00e88cc3a430f3821affbf4e *R/posterior_probs.R
1b34a268e69de66c179193c1d15896ab *R/print.hmm.R
bb251626065bd2b982524ff6fc10ae59 *R/print.mhmm.R
1ee30703cd7779651aecca4dcb10a181 *R/print.summary.mhmm.R
b132037d5958d8f623d81b9eb56250d5 *R/separate_mhmm.R
3afdbcedddea2a60142d90f99511e0b0 *R/seqHMM-deprecated.R
1c743aef4f24801d15a7b7ca766ecad6 *R/seqHMM-package.R
f3c09851e5256bb46561267738ddb941 *R/simulate_hmm.R
d3116b04509e559e8eccf0d141d2f1e7 *R/simulate_mhmm.R
18794c287dc840452d948e9ae372c225 *R/simulate_pars.R
d89f049fad615c06487b2f3ce9056d37 *R/spread_models.R
2a434d84022539cea4322d5a481e0f4d *R/ssp.R
e2b1218aea2376e5ef6bfea2502c53de *R/ssplot.R
c809babc827ff52593867c74ea3b675f *R/ssplotM.R
9436feabbdcc5d2a701449aa8c68ac77 *R/summary.mhmm.R
0a8f8d4c287368444e0ac6bb418bed01 *R/trim_hmm.R
98c7d35e8dbd692cb5a44e6c324435e6 *R/vcov.mhmm.R
39b679ce714ba03dbe8911e12fda7c45 *build/vignette.rds
24d8098b9e16c0fd497d674af8c740c9 *data/biofam3c.rda
07df3b55fd8db67073a1d34aaa35630e *data/colorpalette.rda
dd187977cf5880d446b623d1c8982a88 *data/hmm_biofam.rda
fd3c82e79109fd44a48e6d07597f4d19 *data/hmm_mvad.rda
57777ad97b24b5d51d3495527525dbc0 *data/mhmm_biofam.rda
3889dcd736e00a5e199e246dfc5a2f9b *data/mhmm_mvad.rda
e57b56527f10873bf218263a5d01deff *inst/CITATION
85260a3e4d8ded2d00def8f6c038f941 *inst/doc/seqHMM.R
9e93073f398ef34b6bda299c482efd78 *inst/doc/seqHMM.Rnw
a4b1fb68a89c71664b4f72043b312c2c *inst/doc/seqHMM.pdf
ed1271ea9bd733065d3c99d5a7f3a209 *inst/doc/seqHMM_algorithms.Rnw
51828d81a1a7865e2dfb16be6f024536 *inst/doc/seqHMM_algorithms.pdf
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1be64e77b26b69a8fa0725b58c7dd999 *inst/doc/seqHMM_estimation.pdf
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95897d03aa7b3f34e522e81bb28b97d9 *man/build_mhmm.Rd
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2fdd0f636441df9d99394917dffa4849 *man/build_mmm.Rd
187f6d32633f0aa5e26b3a545d29fab4 *man/colorpalette.Rd
d1128740e238212f7dbd6b9ec93ad072 *man/estimate_coef.Rd
a87acf2916470fc127fb49a5a8ef27df *man/fit_model.Rd
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11c42ef24729fd89c634decf678608d4 *man/gridplot.Rd
ca2080d544a43e12e66d9f654bdd1f95 *man/hidden_paths.Rd
4982eeeac5024b1dbc2ee51e49ec8e84 *man/hmm_biofam.Rd
a186c1abea107a303df9cf7b2ba11ceb *man/hmm_mvad.Rd
b25389ef3421da5f2161135084b31727 *man/logLik.hmm.Rd
ec9c7463c6dfff4b610adae762ff691b *man/logLik.mhmm.Rd
16b2cb060f7dd7d120895c6c0120eb8d *man/mc_to_sc.Rd
8b2cdec35795d95635dd5925b683ef9f *man/mc_to_sc_data.Rd
ccf48b076136f0880900587aa9d99805 *man/mhmm_biofam.Rd
1fc598a72b7600dbdb57844e8831838b *man/mhmm_mvad.Rd
27959748bdd82c22dd44092037e5c5b5 *man/mssplot.Rd
e202933d2cff86b14bf37900562ff6b8 *man/plot.hmm.Rd
ea53603dc67d6ecab94a3fbec638f07f *man/plot.mhmm.Rd
757a8f5b1efbbf7c2251e3eeeff981b7 *man/plot.ssp.Rd
01aa3787f0ec26b4b044d64efedffe22 *man/plot_colors.Rd
88e5f89388a7b822a2d5c8e6a0cddc00 *man/posterior_probs.Rd
520c81a9020a80d611a723c12def971c *man/print.Rd
45f835b43cb6e7391582dc0cd23bb775 *man/separate_mhmm.Rd
84086d92a7c8f2b7cc671a39653428bd *man/seqHMM-deprecated.Rd
1028fa28dde1fb299a7fbf3c23028163 *man/seqHMM.Rd
186392d4c42a99a83dc5dfeaf9a777fb *man/simulate_hmm.Rd
e4eec1711e28f090c1db2161a2bbc6f9 *man/simulate_mhmm.Rd
a098eecd11d8395f4b332fe79b661cc0 *man/simulate_pars.Rd
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9f2455176e8461ea346d2c235e2cef00 *man/summary.mhmm.Rd
61ff9eeaea1450828ec5be1b6146273a *man/trim_model.Rd
490dc1c0fbbfbe7aad8d01bd385d2807 *man/vcov.mhmm.Rd
c62f78c68809fe56c2bda3a7825fb0ca *src/EM.cpp
c144503d9542d4cbb2aa41725284bd6c *src/EMx.cpp
9ae100fdd0b23ebcdaefe1704a0077ff *src/Makevars
c2542d7bc1dac4ce0ed2a3a874cc988d *src/RcppExports.cpp
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a9c178d687ccdca0722da7b57d048694 *src/forwardbackwardx.cpp
eaa33dcc1923c5f9d39738207866365f *src/init.c
243ddc27da53c3e24a77f03e1baecbbd *src/internalBackward.cpp
6bc9059e40459efd2b8bf38f832f102d *src/internalForward.cpp
20f3ec5e3dde567bac17f9977054dae1 *src/logLikHMM.cpp
c94cf0dc45872a10683f779b28c7b6b8 *src/logLikMixHMM.cpp
cbf4ec71da0260198978ae733d540e39 *src/logSumExp.cpp
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9836a5e1d8b2d4c4608b62b56978c5b7 *src/log_EMx.cpp
2c4cc840113279b4f6af4ba063b55187 *src/log_forwardbackward.cpp
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11b2b44def61bd95df450a9a03daad1c *src/log_internalBackward.cpp
d079511214231aac9779510f445e305c *src/log_internalForward.cpp
a075a155fd12ab022c7e074c7e0ff332 *src/log_logLikHMM.cpp
9cc85fcbe3c78cf0f4729be0823bdf2f *src/log_logLikMixHMM.cpp
f5b2e5dc60c05ca82b1ba439253c6612 *src/log_objective.cpp
6c5ed465978381c2b86507f43c02a1f1 *src/log_objectivex.cpp
555b67035d0a5adaa83fff86692d8ec2 *src/log_optCoef.cpp
a5ce1801efa3872a29ecdc82c27e4618 *src/objective.cpp
37d6163d8a33614e3d4668eee837b222 *src/objectivex.cpp
a9b497869d41161e98bdf28f0b0994ea *src/optCoef.cpp
91f652aeab5b3fe03459362efe089849 *src/reparma.cpp
56374cd20c661f8cb445a55e1089b198 *src/sa_opt_coef.cpp
99276459047a0cca57d9c887caa83d48 *src/seqHMM.h
ff9673904dfe9a9b0aff0a4bba057eb6 *src/uv_forwardbackward.cpp
4549991a613027407f6c988a5c7985ad *src/varcoef.cpp
98b016e334f11e6b36a3d9979dfa5871 *src/viterbi.cpp
a82b654591200402d7ae60988c2a253b *src/viterbix.cpp
2891a2f512e45cb46306d38b8714113c *vignettes/references.bib
3db268ab05f93635b883c3f12e6e7fc4 *vignettes/references_for_vignettes.bib
c925bc4146b41647ad325d5fe483f812 *vignettes/seqHMM-concordance.tex
9e93073f398ef34b6bda299c482efd78 *vignettes/seqHMM.Rnw
5736fc99acc1e3bd97a341e25475bb6a *vignettes/seqHMM_algorithms-concordance.tex
ed1271ea9bd733065d3c99d5a7f3a209 *vignettes/seqHMM_algorithms.Rnw
d45d8583fa944e84271be94f4cc31968 *vignettes/seqHMM_estimation.Rnw
c59b26e8e0cc83df9bc50f6e1c6976b9 *vignettes/seqHMM_visualization.Rnw
