b858ba6dcdcaa9e4be560a11dd3920db *DESCRIPTION
620e13196f341178434a7135bae9e4be *NAMESPACE
799254384ba4e931fe40424eb023d552 *R/RcppExports.R
d9dfa5cfddf82ffd9a19a73a91924b50 *R/rags2ridges.R
6e25f577efeae03b3f7262b41a6582ae *R/rags2ridgesFused.R
a6edb6c6152cbdc54d68f1c0bf52a1e4 *R/rags2ridgesMisc.R
43b9439001374b3310b95adb3b346a00 *README.md
0a5d10785a61376b41d1d33881eb8133 *inst/CITATION
d03e0c2f03b93b4bd2511eb8d63540b3 *inst/NEWS.Rd
cdf52f862a37230f3d0e8dca2deba14b *inst/RAGS.png
53180b4f518d888e84143dc6ff086c60 *man/CNplot.Rd
ef9bfba346e8bfbb083582d536dfd921 *man/GGMblockNullPenalty.Rd
f454e25e72a9f3c3679d940d881a8f2e *man/GGMblockTest.Rd
9f2879623a7a9156aca467ef87b04816 *man/GGMmutualInfo.Rd
a16f73fc3a465aa0dbf559488287f36b *man/GGMnetworkStats.Rd
35cf8bd6efaaf02375b1bba5714a304a *man/GGMnetworkStats.fused.Rd
c3c168186cb9b5283b7418844ae2fe62 *man/GGMpathStats.Rd
02f16fbbc810d4791258d5869555f4b0 *man/GGMpathStats.fused.Rd
02d2f08e0e46a4f315f217b38e666e94 *man/KLdiv.Rd
3afe09c2ff0a3fb74b05debba75e22ce *man/KLdiv.fused.Rd
ad08315fed91be312a4eeb781b972626 *man/NLL.Rd
95478d8cd05129aa63d09fb513ad2bab *man/Ugraph.Rd
20186b23de0f5eb6c92580e12e2b2c5c *man/adjacentMat.Rd
db6d32b37bdcab51e230405ba58e559b *man/armaRidgeP.Rd
cb6dee2119c03b1f8351e8cc56ad9892 *man/conditionNumberPlot.Rd
7cef8dacbe2142bd56338b230b309919 *man/covML.Rd
e64335c233331d3ae133ed4a56a2ad6b *man/covMLknown.Rd
96954277567c69f8a7b99280fe947008 *man/createS.Rd
d99b1040c903f716ac8460481adbd77a *man/default.penalty.Rd
8ac7701b4fc5410e827d4f2d03b4cd40 *man/default.target.Rd
47efc7d32afc77b12b89359ef90a110b *man/default.target.fused.Rd
5a6e34848aac9f4b912936c929ffcac0 *man/edgeHeat.Rd
5e7afe4fd70ee75ca8acfe144ad9f667 *man/evaluateS.Rd
c755d6be91389bb2af25cf472e96baab *man/evaluateSfit.Rd
d67b0b7920139415ddf37d0fe1fdf2e7 *man/fullMontyS.Rd
53b2485557256fd5ef7606936c81ef02 *man/fused.test.Rd
a8e91371f0a6dc6435648156e882baf7 *man/getKEGGPathway.Rd
c7a489f35cb2bdcdfe2834b0d305ab88 *man/is.Xlist.Rd
aa48af9c9d5f4dba595ac9bd34c07a7e *man/isSymmetricPD.Rd
ff57177cce6e837afa9ea9e556c36836 *man/kegg.target.Rd
794ccc00b1103ee58d0f954dc3e9c4b3 *man/loss.Rd
6e581e9dd7fe8582ec9fd1d4f4f0b668 *man/optPenalty.LOOCV.Rd
2919c3d6787ce14c7af3cf330998d0fc *man/optPenalty.LOOCVauto.Rd
8fe91e628afccdc91aa419ba8ae78243 *man/optPenalty.aLOOCV.Rd
925489275068380e7c238f67a3f731f3 *man/optPenalty.fused.Rd
e78429dfedeac6b165f7154e8572e148 *man/pcor.Rd
8ad64aeabce2fde946e4e7d4ee00cc63 *man/plot.ptest.Rd
b3c9d2d1cccba1dda3548d25fa59919a *man/pooledS.Rd
866e1cca054ada12244ca9d8f76683f7 *man/print.optPenaltyFusedGrid.Rd
1d00ce08e5eaedd493c4db902e768bf9 *man/print.ptest.Rd
b723fceec20669655a203486f7692c90 *man/rags2ridges-package.Rd
b25e6abac21cd201f3117df64c8d2f26 *man/ridgeP.Rd
14751e12923adabf75c28e8a5bd7a5a4 *man/ridgeP.fused.Rd
8274d995833f44dccd8bd8fa6c905737 *man/ridgePathS.Rd
13c2876787b4aef826a0cc108d43a51c *man/ridgeS.Rd
61ae0c0947f535824700ecc3b54d667a *man/rmvnormal.Rd
163d060ea10fedb0a7c37ba5da62d42e *man/sparsify.Rd
ca6ee3710b7b5f7c95265e05d86d0ede *man/sparsify.fused.Rd
35c1867478cbdb264751547a3ab51b2e *man/symm.Rd
9bc5aa7d4334d43640f515c9a1fd70bd *src/Makevars
9bc5aa7d4334d43640f515c9a1fd70bd *src/Makevars.win
2de9533468a772dcfea6ea7376d6cbf1 *src/RcppExports.cpp
82732d35749e503610ea94f4d130e5ea *src/rags2ridges.cpp
9b5628ba22813aab0c9d786f412a9f12 *tests/testthat.R
f5926de26e9a03d680bee2e9f791385c *tests/testthat/reference-values.R
3c03eeae250770a8aa1aee2858690aee *tests/testthat/test-armaRidgeP.R
a42a8950cf203ed9b913687f24f0af39 *tests/testthat/test-armaRidgeP.fused.R
3f2e0fe494e20aaf1a5c6d771ee9f22c *tests/testthat/test-default.penalty.R
0f6a90617dd090bec06908a91bea0988 *tests/testthat/test-fusedUpdateX.R
cac948750b22790aa228e4754848d0e3 *tests/testthat/test-isSymmetricPD.R
88cd0d7535b4f9420c49ccdc47b453ef *tests/testthat/test-pooledS.R
baca779de1b9de159b33a5d4d173b5f1 *tests/testthat/test-xfcvl.R
