7c35c1c070dbf9d62c5de5096761dd19 *DESCRIPTION
359530e46b538323619bfa4d7bfdb76d *NAMESPACE
873a7fb21adea34f9f6bb90273532585 *R/IOTCmove.R
2b0fa1c892d447a81b4295ff2b79c987 *R/NegLogInt_Fn.R
0e7072dc127e4df8b690618b020187f2 *R/PinerPlot.R
3c47520869fcffe443292b4815d37f38 *R/RebuildPlot.R
75a1b9fd878073ee588083b14aa1732f *R/SSFishGraph.R
cd694a9f42ff51f1e8c0088195606136 *R/SS_RunJitter.R
5c857ccd9c041f3913b8c33422f0418d *R/SS_changepars.R
bb95c22d09786f7cac591305e9c70e72 *R/SS_doRetro.R
927335b9698558cf02451602e5d3a0e2 *R/SS_fitbiasramp.R
2bb8b199ec53e1ea1e2b7a007aa46f1a *R/SS_html.R
1defd2c44aaa3f7d17d9eccaa47defad *R/SS_makedatlist.R
e3b23a478dce183117f37618389deba1 *R/SS_output.R
66b2bb8278d96cf41f9d08079514ae14 *R/SS_parlines.R
d180cbe6c2314c391b76473eb33262a2 *R/SS_plots.R
7e6b6b5cca752020e6c7bee35828fe39 *R/SS_profile.R
50b44a05ad79779840d59a0c0741a275 *R/SS_readctl.R
f46dc3e2fb8b635fec06392231c522d6 *R/SS_readdat.R
2c80b7c4044c9a640d5bb554581cf596 *R/SS_readforecast.R
8d77deb03c71ff98b1c42509838a4f70 *R/SS_readstarter.R
93567fd63643486f936941b79033d84b *R/SS_recdevs.R
3d774f2e70aabceeaf1b8f9881bc8e37 *R/SS_splitdat.R
b8090c4bef17a5dc70b873cf1d1911b4 *R/SS_write_length.fit.R
dd5acdbd3addad42fe4d7c7132e74b03 *R/SS_writectl.R
69fc7873491afd6544b1b27e165b9d8b *R/SS_writedat.R
308868b3dfb96854cee86964491b521e *R/SS_writeforecast.R
0d628a4925b9cccf917504483a3dec54 *R/SS_writestarter.R
d9ef81b3ffa830e9b3e469e6107d9a5a *R/SSbootstrap.R
a39e3ca296e26bd9fcb956bf21e8e5de *R/SSchangeYears.R
ff342498a7a439fb4e651b867adc433f *R/SSgetMCMC.R
401350fc4445195ea001d8a85aa34e94 *R/SSgetoutput.R
53c85106e3910cd5d5fedc61d2b75023 *R/SSmakeMmatrix.R
81f462359cf17144328a2d087fc5f840 *R/SSplotBiology.R
49b73519c065a52c1f41c31b42b043f0 *R/SSplotCatch.R
cc90ebf28a9a084024fd7dd7b1836214 *R/SSplotCohorts.R
7b6b4866fbfd759f7e451145760d5538 *R/SSplotComparisons.R
f3246b9943ab308961418122e1e68c95 *R/SSplotComps.R
5f8e2f9e6d05bfe7f54d6e75b1a0133c *R/SSplotData.R
13edc7c2a6febb9b38adf3e1ffaad89b *R/SSplotDiscard.R
f2a9f111e08eea5b01c0f51557fdbae2 *R/SSplotIndices.R
a03ff7d2a6a00860becc2770d32699b1 *R/SSplotMCMC_ExtraSelex.R
9ab75e0abbd434f65e1b453eec900594 *R/SSplotMnwt.R
cdd506bca06467a6944ebf5dcc08e490 *R/SSplotMovementMap.R
9102b3cdd129c3a2c667a5c965707cbb *R/SSplotMovementRates.R
0f5e5e179a505020224e71db3674d9f7 *R/SSplotNumbers.R
298f1704925e8162957c2140fecc1b6f *R/SSplotPars.R
8db7702444ab9316f673ec3486ca08e6 *R/SSplotProfile.R
9ea3b58c3b13e040e9540c068b702fa2 *R/SSplotRecdevs.R
82f3d5a22cf45df25db9f7f9ea547530 *R/SSplotRecdist.R
167cd535ab266aa3f039a4b7e9af78b9 *R/SSplotRetroDevs.R
33a92d0646f29c22b2bb0705fb671f28 *R/SSplotRetroRecruits.R
f6b69e9ed70cd0ddfeb8286aba6df9e0 *R/SSplotSPR.R
8698ff5fdea17dcb539a9d3732c49c5d *R/SSplotSelex.R
7431d5289c01d44bc731f84c0718b52a *R/SSplotSpawnrecruit.R
4d956d2d7c10e19d3139d3bef6d1f5d5 *R/SSplotSummaryF.R
9c67b0e9be3e3f97b854ce14075b1b48 *R/SSplotTags.R
a329ad0b80e6d1b9f68e9d4df646f530 *R/SSplotTimeseries.R
aaba1c29b5d573c6b0ee259235598808 *R/SSplotYield.R
1f8b6111dae0f22f8a68b9b73ad67e08 *R/SSsummarize.R
6b06d1be476ffca4a8f5e988fa115ec6 *R/SStableComparisons.R
22052b982f2ecb988a983060c6143f24 *R/TSCplot.R
49403c718cc5816eec8f50f29c284953 *R/addSSsummarize.R
abb6b948ad4e54c0f450a16a6288c034 *R/bubble3.R
e4049aab4b66ba447d9f1bf20f7f62d4 *R/getADMBHessian.R
274ad8ab39c648519664cd84c3c6cea3 *R/make_multifig.R
14b14f26771ad6371afbfa064d171038 *R/mcmc.nuisance.R
cc08d7a61ad6debdfd0fcd4071eb148e *R/mcmc.out.R
36ccdce1ac45964bb86ac776c52f880b *R/mountains.R
1aabd9d0ad13e921739f8a4052eef22a *R/movepars.R
7e61909543fd85085f8f973373185e75 *R/plotCI.R
0e51264ac8f4637e952ffaaca753f23f *R/r4ss-package.R
99cd22a57586d3d6014d3141169114d3 *R/read.admbFit.R
c0ada282752d5c10131b2ffdd9ee31cd *R/rich.colors.short.R
3f01b7a4697f5ee0b703f67a086b6e09 *R/sel.line.R
f7487b0dfab6f781e91ef1d529e0fc19 *R/selfit.R
5906866e3afbfbcaa3e52970520f3548 *R/selfit_spline.R
db8457e91666db221b1b1f8d87e0668a *R/stackpoly.R
f8275de03f0198c877975c9695e3d63d *R/update_r4ss_files.R
872fe0ca1d5bd19d04858c90c87da82c *README.md
07e5bec8594b03608e7bca0100e9aef3 *man/DoProjectPlots.Rd
23d8fcfa8d6b6c2cfdeefc73841fcf6d *man/IOTCmove.Rd
47a855158a540b17c45d7ed5ee7d40b6 *man/NegLogInt_Fn.Rd
a6e7a3f668e785b951157cdfdd0064cb *man/PinerPlot.Rd
e8fe1c6a1fddaa47be1b41084e98a195 *man/SSFishGraph.Rd
9e234facf597f0f14a981123dc7c2c17 *man/SS_RunJitter.Rd
a46ba39ceac3569dd08e317ca536ac6d *man/SS_changepars.Rd
b13f1e0cac6f52a6c9dbc42c30d15f3f *man/SS_doRetro.Rd
ee298c966bbb3e1ac0d9a94dbf86e681 *man/SS_fitbiasramp.Rd
aafb8dde3b6292c652e9e9c613e4d5d2 *man/SS_html.Rd
aa83d364a10240c657211189b704ce88 *man/SS_makedatlist.Rd
21c25c973a148547d318fbdd57154d1d *man/SS_output.Rd
71e474d83824e72f40369510c38c59f4 *man/SS_parlines.Rd
a4c94b6f43907eb37d82c9474609bc56 *man/SS_plots.Rd
e3ced95d0e76bf72f815cb10cd1c06eb *man/SS_profile.Rd
851f8bb3ae67ace6e6f18cbf5034de18 *man/SS_readctl.Rd
069d98f054c4569d3d8171f83aade93f *man/SS_readdat.Rd
1b53412e20f09e9c06482d3f5e71d587 *man/SS_readforecast.Rd
a1ea7b97f1e6518600ddc051e39501dd *man/SS_readstarter.Rd
1e710a60ac6101a76da97743f6875791 *man/SS_recdevs.Rd
1bd5999ea61abea0e0f0a69d32ae5a1e *man/SS_splitdat.Rd
3eaab96481b5dcfc0124c8a066b4d8be *man/SS_write_length.fit.Rd
6e4e8b554b67281082145b74e24c4f3b *man/SS_writectl.Rd
0373dee0c68640e241f70a34f256b183 *man/SS_writedat.Rd
f87d5106269d7391f2b7b1a0f15cdd54 *man/SS_writeforecast.Rd
24e9ce27553a95e62d5b309865920c60 *man/SS_writestarter.Rd
5d3761bbf6d74281e22fb50e44c5ff28 *man/SSbootstrap.Rd
2e2b819124fb100ac6258b64dc63465e *man/SSgetMCMC.Rd
ba4c9af81b3abe1e502fce107f81d4bc *man/SSgetoutput.Rd
f3e1746de73a2016e6f7bd3b5dee1ad2 *man/SSmakeMmatrix.Rd
3b89b22f8a8c487ae02f1016ba0c4087 *man/SSplotBiology.Rd
6df4b7cceadd44f27df89ff9ca32ca6b *man/SSplotCatch.Rd
df4f6eef37f6ca8d1b75e8fca97d61e7 *man/SSplotCohorts.Rd
2d0c7e102411ecad28f819cc10b7802e *man/SSplotComparisons.Rd
f21ea3779e620ef3b003af93a9ed97a5 *man/SSplotComps.Rd
ee6299e5ff4a43326a77bdbcbb1eebbe *man/SSplotData.Rd
5a9fe4c5b81a3b186b611b4de56b97b5 *man/SSplotDiscard.Rd
18a69041d4ff0af87dded2b09cf57784 *man/SSplotIndices.Rd
703cb8d54d286477b907f1050e9b5b18 *man/SSplotMCMC_ExtraSelex.Rd
a6239f0ab338087316c18b155af0f2f5 *man/SSplotMnwt.Rd
b51e565daf236fc1a8bf823d060121e6 *man/SSplotMovementMap.Rd
1c8e9a97d6cdda040ff81c05d40a53e1 *man/SSplotMovementRates.Rd
bb5bebb3c7f534e798ccd0b7f25bf545 *man/SSplotNumbers.Rd
35488313a998830ac085b6feaf5478b2 *man/SSplotPars.Rd
064b6717872a21cdb2016d8b21d6ded0 *man/SSplotProfile.Rd
83dfd9529b1ec8a1a17cf8f2abdd3df2 *man/SSplotRecdevs.Rd
34e06a44069704cc91c568957e8494b9 *man/SSplotRecdist.Rd
b9c1e55f83fca8a0e416167ab7eb7d15 *man/SSplotRetroRecruits.Rd
c3d0d811cea9040456bb7ed2806d0d53 *man/SSplotSPR.Rd
0c7f4415ac4642973e49ee215f961988 *man/SSplotSelex.Rd
4995148703bb2d570bc45a96862aa969 *man/SSplotSpawnrecruit.Rd
96e047627e5e72a36a7f693262460edf *man/SSplotSummaryF.Rd
4a332959ba2790709225b4067bc97b88 *man/SSplotTags.Rd
3f7b4f48b71992a6b89200f5e4b85073 *man/SSplotTimeseries.Rd
5bc0601781ab5db4967b359a2b53d3bf *man/SSplotYield.Rd
0fd802f355340f4129371bbaa4e74e47 *man/SSsummarize.Rd
e22807d24dcfae25d9f43caa3a9af8ee *man/SStableComparisons.Rd
5fe8bc1429fb16bc9513c497b15d7cfb *man/TSCplot.Rd
6caf3217ad68c5d7e21163d4fbec9c93 *man/addSSsummarize.Rd
374440241c4c931f18315b95388d4bea *man/bubble3.Rd
8ea10c36459533f00e215213e9dc6ec4 *man/getADMBHessian.Rd
f1232259f3445a89c31af6c1d9ebc069 *man/make_multifig.Rd
ed38602337af355cf621797226328918 *man/mcmc.nuisance.Rd
5decab20bbe24295ffcd82118218076d *man/mcmc.out.Rd
280159d092536012d85becee4b9b5175 *man/mountains.Rd
ff71be6937053082febf6c8755c89b07 *man/movepars.Rd
22375c8b750d0ec4e9ebf27643fb1a8b *man/plotCI.Rd
f5c275f26aa0edce1c03e27fa656fd1d *man/r4ss-package.Rd
9db383b8bb472332604e7b45e3f173e9 *man/read.admbFit.Rd
921e3af1095e71fbefb20ebbd9d0a72f *man/rich.colors.short.Rd
41811e7b56bf5025628a7c1d6036d7c6 *man/sel.line.Rd
1a2c29ea11e4baa92fd20f85d1599203 *man/selfit.Rd
33bd611bcd28357d67f3a7cca399b074 *man/selfit_spline.Rd
40958528b84b5f753ce1c45c253458c5 *man/stackpoly.Rd
dc823721a3360fb7ef6089f77bdfe319 *man/update_r4ss_files.Rd
