321c971f419aeeee1cb716f70d901841 *DESCRIPTION
2a2bf2d22d2ee7163335f1535cc3d264 *LICENSE
c190f3515289f568e25715b8aefadabc *NAMESPACE
98bce3071cd2635a0812d2f516aa74de *NEWS.md
7a2af1031ccd7a5d78127d4a6abaec37 *R/applyQC.R
e22395b586f8cb59e887a7831f7bf61c *R/individualQC.R
8513da894c97d169bd0aa5bf83c6c1b3 *R/markerQC.R
34e1020c4bd53fbd34c8591a50571a45 *R/plinkQC.R
2f505dea9219ba1a33057d7a08271063 *R/utils.R
fcf1fc62ad4d8aa5182db6df8e03d5a8 *README.md
de92d3465366ddcc0ba870c39f203613 *build/vignette.rds
b83973102b5f0aa241a157034ef40ca3 *inst/doc/AncestryCheck.R
8b9b2cd316d8ce7f05c0c77fddebd7e5 *inst/doc/AncestryCheck.Rmd
3a6a624971efc7a71647d5cf4ab3041c *inst/doc/AncestryCheck.pdf
dde2584c0ee885c47939277e2fb08ff0 *inst/doc/Genomes1000.R
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dd78fafc254aa465a20e1a12417b1a1d *inst/doc/plinkQC.pdf
c321532c2963a36376c7be2ea8eb40a3 *inst/extdata/HapMap_ID2Pop.txt
7f71cda36fe7af3ace03013be8e18848 *inst/extdata/HapMap_PopColors.txt
701eb84786937dfe5af10d154c8e3a55 *inst/extdata/data.HapMapIII.eigenvec
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47a12d88d879c865f12a1043a07e9e77 *inst/extdata/data.genome
3d9be1742b933446aea340cd8e898ab7 *inst/extdata/data.het
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3bae3da0be2a4e5aceab362b13346496 *inst/extdata/high-LD-regions.txt
dfd8726581f135e2c56637ac581f8763 *man/checkPlink.Rd
d0c91a389a2aab57e14623a2c162b97e *man/check_ancestry.Rd
0052aa06e2d0d8255969c3f5c77a2acf *man/check_het_and_miss.Rd
b6d3c51204ac1b66c6c7849fe381d485 *man/check_hwe.Rd
c56ebc837de35f1e8b379ec5774bb98e *man/check_maf.Rd
71c5cc1a1751776b6c0abfae22cda782 *man/check_relatedness.Rd
fedbc4089c4f8c267cb2730e63d968a2 *man/check_sex.Rd
290019fb6647ad73b77ed330fa9cd2e9 *man/check_snp_missingness.Rd
bb6466496c47c2690e83bbc8711cbfae *man/cleanData.Rd
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c8af89cb34d69c6a1d938afa22a17159 *man/evaluate_check_sex.Rd
421b9d0a3e0d39bd4ef0c4cca1a636c8 *man/overviewPerIndividualQC.Rd
d22421f8c68b6121721bab8e24b89aaa *man/overviewPerMarkerQC.Rd
df60c8bc39c670046f4ef1c8ee955ea0 *man/perIndividualQC.Rd
93f7965f725d58e27c5d156961747811 *man/perMarkerQC.Rd
a145eb8b7d9da9bbe370033693d0ad66 *man/plinkQC.Rd
250dab0471c5325ce92e0a19615df598 *man/relatednessFilter.Rd
c2c9b4cff3a820ad5e2c677c1a68315b *man/run_check_ancestry.Rd
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78540a4c8350bbe0fb9f1c4b9055a0c2 *man/run_check_relatedness.Rd
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b1ba65254eed243d49282748b988ff28 *man/testNumerics.Rd
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7f71cda36fe7af3ace03013be8e18848 *tests/testthat/HapMap_PopColors.txt
701eb84786937dfe5af10d154c8e3a55 *tests/testthat/data.HapMapIII.eigenvec
5a2e018e96ea392df95e814ed2caed35 *tests/testthat/data.bed
502970642c8b1b63c86d199d76691de1 *tests/testthat/data.bim
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daf4367b8041bc1ca58145ad155a84b3 *tests/testthat/test-individualQC.R
3342eb09a66b2fa9d8cc6cb4c6def7d8 *tests/testthat/test-markerQC.R
8b9b2cd316d8ce7f05c0c77fddebd7e5 *vignettes/AncestryCheck.Rmd
4ba94c0bca3080fa299c001ecaf43e6b *vignettes/Genomes1000.Rmd
db686827ec6f8465bf29629311659882 *vignettes/HapMap.Rmd
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a9f88cf94885e415c5d4ccbbc241ecf7 *vignettes/individualQC.pdf
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367273bc2d20b49bec5f737601fb2b99 *vignettes/maf.pdf
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f1dfcc88c2f2a43dde4fd95969afbd05 *vignettes/markerQC.pdf
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8d978719632ab46b5663d8beae5bde3a *vignettes/overviewAncestryQC.pdf
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7a15899e77edf201d5bbeaa649912ba8 *vignettes/plinkQC.Rmd
2c678b25dbe4823676bd308c323565c3 *vignettes/plos-genetics.csl
d4189cbd7128ea5721b796e5e6605154 *vignettes/references.bib
46ba4c61b176bf348367bdaf55dc897d *vignettes/snpmissingness.pdf
79f714555e89a1dff229988c41917261 *vignettes/snpmissingness.png
