commit 9ad88957257dcc3d4941bfec3984c4457b0c3c1e
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Release papeR 0.5-0:
    - moved nlme, lme4 and survial from "Depends" to "Enhances"
    - reflext this in tests and manuals by only executing the code
      conditionally on the availability of the packages
    - some small fixes in prettify.Rd
    - updated ChangeLog

commit 1ab6a8b1d97ebbdd149666d7a371728fe82d1a7c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    - additions to NEWS.Rd
    - minor changes in manual

commit 6c03a3d02689f14f56227f0f52110a3b5482a717
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    - change plot(data, ...) to plot(x, ...) to make generic happy

commit 5d47a952df7229fb35218cfdcd943f7366afa614
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    - started preparing a new release version papeR 0.5-0

commit b2591f861040b3b7d0111708358458147d0d0d4e
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    - Changed plain text \file{NEWS} to \file{inst/NEWS.Rd}
    - Updated SOPs

commit 2be302673464f4348b18df8439bf04b83d4c0a0b
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    - fixed bug in toLatex.sessionInfo(, citations = FALSE)
      (spotted by Brian S. Diggs <brian.s.diggs __at__ gmail.com>)

commit 6e539575e82122f92364a4a056c381420b4284da
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - strongly improved plot function

commit 33ccd65b1d76b1825fcbecfcf085a844d616fdd7
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - add plot method to NAMESPACE
    - export some of the labeled.data.frame functions

commit 2db46aa38a378df0ba7c181ac895dc84f75cdc06
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    release papeR 0.4-0
    - added .Rbuildignore
    - minor changes in tests and examples
    - updated release SOPs

commit 9724356eca78356fc95af96eb04a0c87f148cac7
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added helper script for package preparation

commit 62c20def27ea641cbdfb57feed6666fb82cd985f
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - make lme4 >= 1.0 happy
    - minor bugfixes
    - changes in NAMESPACE and imports
    - added .Rout.save files

commit 1ed6b32c13f218aed209c2b4ac1f66561f163379
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - included better handling of environments in prettify functions
      and checks if the data has changed
    - added SOPs for releasing package

commit f2dc013dc7c7d7c5209efc5e73ce3c974e66bc66
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - better guessing and handling of environments for model refitting
    - experimental version of environments for coxph and lmer models
    - users can now specify confidence intervals directly via confint, e.g.
        prettify(summary(mod), confint = confint(mod))
      This helps to in case of environment problems.
      In this case, labels should also be user-specified!
    - added first tests

commit fec391a80b4c1268ea82200620b013c5f14cf873
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - updated news file with missing items (for version 0.3)
    - included (experimental) version of prettify.summary.merMod
      to make lme4 (>= 1.0.0) happy

commit 6692a024829bdc30d690bcd76e67d7c50d9f55de
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - improvement/bugfix in rbind.labeled.data.frame()
    - bugfix in is.labeled.data.frame()
    - improvement of toLatex.sessionInfo()
    - numerous improvements in manuals
    - added missing items to NAMESPACE

commit 063fbb8534c2e0edda047057d981b6e2829fb12e
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    release 0.3 to CRAN

commit aae17d69e487d5f608215f262fca2b25b7738510
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - added plot function for labeled.data.frame objects that
      allows for univariate plots and grouped, bivariate plots

commit b07341e270c6c3903965d2c48f7b8b6da514daa4
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - added NEWS and ChangeLog
    - started preparation of release candidate
    - increased version to 0.3

commit ab7409c4dfdde5b2b296e9d5c964d39629662787
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    minor changes
    peparations for release candidate

commit 2ff233d5d3a00a0e41ab5ac64a4a4bced27c515b
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - fixed bug in prettify.summary.coxph (labels were not correctly guessed)
    - changed default to x[..., drop = TRUE] for labeled.data.frame

commit 59837493b9bd2d6a9e30ec7858f48387eb3fe13c
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added missing file

commit 602cdd3499a7f731800e0644c8f41ba6ed646dc8
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - removed summary_fixef
      (better results can be achieved using prettify() on summaries from random effects models)
    - added confint functions for mixed models
    - added function is.labeled.data.frame
    - added documentation for new functions and for extraction and subset functions
      for 'labeled.data.frame's

commit d925f0f7ab394b8391f4528f5f3eed2d054f841b
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    - defined new class "labeled.data.frame" with special
      subset, cbind and rbind function (to keep labels when changing data set)
    - new function as.labeled.data.frame
    - new prettify function for summary.coxph
    - new toLatex function for sessionInfo()
      [with nicer results than the default function: e.g. citations included]

commit b1491b15989b39e8889013c3c9dbe746790a5cff
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added prettify methods for lme and mer summaries
    lots of improvements in prettify

commit 717043839c5b517937ba87c3ab0bf3024fe5d459
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    bugfix in labels(..., abbreviate = TRUE)
    added prettify.anova for Anova and anova results
    refactored code in prettify
    latex.tables.XXX now with argument labels = TRUE for easy labeling

commit 4a7f66a077dc5552f2620da9c80b04afb6c4444b
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    add manual for toLatex.character

commit 13c615cd4f07a7a1bfee8a29daa2da0394bb8bf7
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    make checks happy
    include significance stars
    improved manuals

commit 8c2d9145fb43b919a543e09bf88f202fc8889270
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    improved prettify
    bugfix in latex.table.fac
    increased version to 0.2

commit 419e98125d6f2bba53b9884479c39ba3e2be685f
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    new prettify function for summary.glm
    improved prettify function for summary.lm

commit 92fe3710d46d3c66db618ec566adbdcec23956e0
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added toLatex function to sanitize R output for usage within latex
    added automatic sanitization to latex.table functions

commit 99cded04857b9295c4895aef32e96a5e6132d180
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added prettify method for summary.lm objects

commit 01689b0a5667f03350d8106dbb4cb74589502b1b
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    improved label handling when data set is alterd (e.g. variables dropped, added or renamed)

commit 0c6ca4b9ce6a50ec5eeeaf1adfe58b841cbd40ca
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    first implementation of grouped statistics in latex.table.XXX

commit b9e216426e3c827445a46bdb2764aa98666fe39b
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added level argument to summary.fixef
    fixed example

commit 1f1a0f9aff9349f970b0aaad43bc2abd3007eb14
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    changes in labels():
    - don't set labels to NA
    - export labels.data.frame
    - report which labels are not matching (if any)

commit ed5045db0fa9ec307af5a59cb2323360edf9553d
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added confidence intervals to summary_fixef functions

commit 69cd468beb625cde0b99d00abc4ef25d91f09e18
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added missing manual for get_options
    added functions to extract confidence intervals for mixed models

commit c40f1631a69fb475c609504e5a1f434f82f091fb
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    refactored code in latex.table.xxx functions
    new arguments caption, label and center in latex.table.xxx function

commit d2968dacb045ab6e960163b882e2b4d30dad3ecb
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added labels to latex.table functions
    try to fix lme4 error ("summary not exported")

commit 2df3f7830c08a8eda1e3b79bc1e2d88a5403a77e
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    improvements in latex.table functions:
    - new print functions
    - other internal changes
    bug in summary.fixef now really fixed

commit 854b61ef2afcfe00ea7ec78e0aef9e67d33af39f
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    restructure code

commit 38e95be3e0efc9eba0e81ac49d888433ba97253b
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    fixed problems with latex.table.cont (with only one variable)

commit 494d38917427d38c2190e811755ce0f4d9a59c9f
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added new arguments to latex.table functions
    added examples for latex.table and summary.fixef
    bugfix in summary.fixef: used to terminate when no p-value present

commit c378929485dce98ebead2b1272a3eaa0164052b0
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    summary.fixef: small improvements in display of p-values

commit d4da872fbc164ec6932fd98f374753dab2c619c1
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    removed default files from project

commit d1188474d45da454e0e4e666810be01603271810
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    added prettify function to improve summary tables
    improved summary.fixef functions

commit 090c3c9ca90ae9d040cd8dff64417d8b9d1bec69
Author: hofner <hofner@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>

    initialization
