Package: mdir
Type: Package
Title: Bayesian Model-Based Clustering of Multi-Modal Data
License: GPL-3
Version: 0.9.0
Date: 2023-05-16
Authors@R: c(person(given = "Stephen", family = "Coleman",
                    email = "stcolema@tcd.ie",
                    role = c("aut","cre")),
                    person(given = "Paul", family ="Kirk",
                    email = "paul.kirk@mrc-bsu.cam.ac.uk",
                    role = "aut"),
                    person(given = "Chris", family ="Wallace",
                    email = "cew56@cam.ac.uk",
                    role = "aut"),
                    person(given = "Oliver", family ="Crook",
                    email = "oliver.crook@stats.ox.ac.uk",
                    role = "aut"))
Description: Integrative clustering and semi-supervised prediction.
  This package includes a 'C++' implementation of both semi-supervised and
  unsupervised Multiple Dataset Integration (MDI; Kirk et al., 2012
  <https://doi-org.ezp.lib.cam.ac.uk/10.1093/bioinformatics/bts595>), an
  extension of Bayesian mixture models to the integrative (multiple dataset or
  multi-modal) setting such as multi-omics analysis. The package also includes 
  Bayesian mixture models. Densities allowed within MDI and the mixture model
  are Gaussian with full and diagonal covariance matrices, categorical, Gaussian
  with a Gaussian process (GP) prior on the mean parameter. The GP model
  implemented canonly handle data with common time points of equal separation.
  The Gaussian and GP models can be augmented with a global multivariate t
  distribution to handle outliers.
Imports: Rcpp (>= 1.0.6), RcppParallel, ggplot2, stringr, tidyr, salso
LinkingTo: Rcpp, RcppArmadillo, testthat, RcppParallel
Suggests: xml2
SystemRequirements: GNU make
Encoding: UTF-8
URL: https://github.com/stcolema/mdir
BugReports: https://github.com/stcolema/mdir/issues
RoxygenNote: 7.2.3
NeedsCompilation: yes
Packaged: 2023-05-16 13:51:58 UTC; stephen
Author: Stephen Coleman [aut, cre],
  Paul Kirk [aut],
  Chris Wallace [aut],
  Oliver Crook [aut]
Maintainer: Stephen Coleman <stcolema@tcd.ie>
Repository: CRAN
Date/Publication: 2023-05-17 08:40:02 UTC
