8f31d25498a963fb1a0ec07e2bf8372e *DESCRIPTION
756ebe712b409f88ff1a10e0d3b60da3 *NAMESPACE
9e053bdeb41963285945b287638acbeb *R/dist.R
4b05a8ea348884ca15c997677a1593d4 *R/dist_def.R
1af7aeae3c3517246bf2bca45970e54f *R/hmm.R
aae0ea29cb63f0ae653b28a9b6e84fcc *R/hmmTMB-package.R
db312b3ee2a0711fe71eeae416a63cae *R/logLik.R
3e36b29e4e2189caa48ca23f65cd1006 *R/make_formulas.R
9d31f3eef39845917f07e1bcb7ed5926 *R/make_mat.R
2089c349d301e11952c8ac0f41ae66a2 *R/markovchain.R
e56201e211987539dac32a0c18907d85 *R/observation.R
bf1e083785f2094f1c800cf206b65b12 *R/update.R
e9c373563afcbcafae7e696aa56562d1 *R/utility.R
04c8bb961cf4747c941da0f0c3431fb0 *README.md
9981a15bfd65117f65400dbd78e3f38a *build/vignette.rds
8a2df4aa9e25089d2cb69e2e49d641f1 *inst/doc/hmmTMB_dist_list.R
9c659353380786233547c284af3184cb *inst/doc/hmmTMB_dist_list.Rmd
b287fd1d50c3849d8ac362aeac7cbffb *inst/doc/hmmTMB_dist_list.pdf
9ad57cd5f65d3c918f3013d3ea8c50ed *inst/doc/hmmTMB_example_stan.R
bde5ce328bc7f0fedd40f73b14472836 *inst/doc/hmmTMB_example_stan.Rmd
84aee5a3f5421b77956c1103c8fbfcf9 *inst/doc/hmmTMB_example_stan.pdf
4aa136bb311b398dc44691158356f933 *inst/doc/hmmTMB_workflow.R
ffc2e6522c9c7c9fb4f453d8a170eeb9 *inst/doc/hmmTMB_workflow.Rmd
e7968ac7bafb499e5caca23e4b392e99 *inst/doc/hmmTMB_workflow.pdf
4ecbc9f6bdb3be8389d9aecbf77e0780 *man/Dist.Rd
1a08e6ff5e98ba091e422df4733a8a1d *man/HMM.Rd
214fce57af2d3b6e8865536a80956b6b *man/MarkovChain.Rd
fb6c4e322dbb7a4bc4db5f25e80ed2c5 *man/Observation.Rd
4111ea45aa5132ba593987dd45d3af67 *man/as_character_formula.Rd
d0b57b08311b28530b42c09c8ae33095 *man/as_sparse.Rd
c55891446f60af282eaf842be506481a *man/bdiag_check.Rd
301f8b3c0e037aad9bf0d950b762c0ef *man/cov_grid.Rd
1dbf28c7c43a27270792a305e3d7b724 *man/find_re.Rd
d9070b2dce278ca780c8c11d6e54566e *man/hmmTMB-package.Rd
2ad9be667c4876915af722ccbe0477ba *man/hmmTMB_cols.Rd
34afed25dae13f8d5b3ad89f6a3001b0 *man/invmlogit.Rd
520d0e9c933c81e698e8a8eee0f06b85 *man/is_whole_number.Rd
3de3707bc5a4584d5ba7e41d5d4101aa *man/logLik.HMM.Rd
fc945b37fffd98521120bab4db75a56e *man/logsumexp.Rd
628b99ea29a814b9d52350011cc805fb *man/make_formulas.Rd
b81a8a16fe5adede2c2290dcacc63b9e *man/make_matrices.Rd
62705fae182bf0f51cd96f81ddff3bf7 *man/mlogit.Rd
1f53c271508b30cd747318709b6fd943 *man/mvnorm_invlink.Rd
e8b5a2ad87aa5d61fe7508babd528002 *man/mvnorm_link.Rd
2204a264a84a2d0b16b65fdf5fdebc59 *man/na_fill.Rd
4c4c6a68ea46ce247a092011d07629bf *man/prec_to_cov.Rd
902c79902c3d3482339639a81be911f8 *man/quad_pos_solve.Rd
e7f9606cfe6b7ca0aae8f05214657d9a *man/strip_comments.Rd
ac0f305ebf7e48660be208a251493529 *man/update.HMM.Rd
9f2b97dbae8654efd2a25ea58c6134cd *src/Makefile
8f29ff4339bfc0b143ac3ed55e9df06e *src/Makefile.win
dd03613ceae9283f1b252917d3f28da5 *src/added_dists.hpp
8faee5ee00f83cd19cb0a82593a6385a *src/dist.hpp
80a4d1a205c9cdeff613ea81c9bc060e *src/dist_def.hpp
b532c7ff2e02fd25865775e54f6d7951 *src/hmmTMB.cpp
2c94fa0dc9e741b8d9e36a4fe0dcf16c *src/hmmTMB.hpp
997eb0f819802cb9e85688c7e3eaef9b *tests/testthat.R
d1ca756fcf4f59d23d1003bb7ed80e6d *tests/testthat/test_dist.R
e1c985d2b5e02fadecfe29b648a0d8b6 *tests/testthat/test_hmm_fixedcov.R
3869f9da9f51d34304f39eb33f741b6c *tests/testthat/test_hmm_fixedcov_updating.R
e1b261356ed1f20cf12c8aca25fae73f *tests/testthat/test_hmm_misc.R
de142bf176bc082da9fc2dcf8615a20a *tests/testthat/test_hmm_simple.R
3d2230bb64e8d4c690ce487cadda80ed *tests/testthat/test_markovchain.R
8e3b20f4300d75c7c2c0522b3b06ff3f *tests/testthat/test_misc.R
e9451af36db03f84ac815114c8c3cf25 *tests/testthat/test_observation.R
9c659353380786233547c284af3184cb *vignettes/hmmTMB_dist_list.Rmd
bde5ce328bc7f0fedd40f73b14472836 *vignettes/hmmTMB_example_stan.Rmd
ffc2e6522c9c7c9fb4f453d8a170eeb9 *vignettes/hmmTMB_workflow.Rmd
0006a6483b1d9bd57116321f917e2431 *vignettes/refs.bib
