739e68f835a9f143e15a77afc7fed2a0 *ChangeLog
7fb202966373e3cc7ade588cdf2ade69 *DESCRIPTION
d44ce004b982f35c584a3c5bb3a71d73 *NAMESPACE
5fce5cf21e19a25861139a229092be83 *R/TESTING.R
0d10db388771a84d5049cd4bceb3b005 *R/auteur-congruify.R
e69852049ee11e0ccea35eca3f5654fa *R/auteur-edges.R
994266aef9aef7ba5ed9dc4e60f1bb71 *R/auteur-gbresolve.R
fa86a18c48254ee3b58a175337ab5483 *R/auteur-glomogram.R
285c35cc58f185b13252e5577c19d963 *R/auteur-internal.R
301e7042ba4ac525fd18fdd309c4f025 *R/auteur-likelihood.R
1efd213dff7ecbf581cdc962857b30a8 *R/auteur-phylo.R
75eafe7fc4f16912ac11bcec39e104c1 *R/auteur-plotting.R
263f2fa628a718590578d8553228f91b *R/auteur-proposals.R
fe2c39923e10cb491a7b40344d25303a *R/auteur-rjmcmc.R
9fd5afec2bee640c021b826931e8e5c6 *R/auteur-utilities-stat.R
0dfa650957cd802df3219cb90ce2b60f *R/auteur-utilities.R
90449c8cf15a2746bbcd400c7c668eef *R/diversitree.R
f386f58937b950aa32130ca37ec51152 *R/examples.R
5da774b8d56b0665e3641f559bca414d *R/geiger-deprecated.R
7d4e218b06098e559e5845cfddba08d8 *R/geiger-disparity.R
2b662c2e12c4d8f83bbfa8b48c9f3dc6 *R/geiger-diversification.R
8d702b42fc384cf4498ca0d7769a3170 *R/geiger-simulation.R
4626b6341570496214d1fe73642374a1 *R/geiger-traits.R
b57fb9f0dbffff91568d10088381a46a *R/geiger-utilities.R
9bee4874d25642982bb6a444637495e2 *R/medusa-model.R
ba4eb6f067a47e4323436f626e641b63 *R/medusa-utilities.R
8f977baeff59b0a290bf1c7e0e23af6f *R/utiliities-misc.R
b6adf6da014358fb49bf3f35d7f6d7d2 *data/amphibia.rda
8660fd2ee38e6755a5cf4a3a4aa5cca2 *data/caudata.rda
e097f93f848b100c9128e81ee3844e7d *data/chelonia.rda
20c2f2216156e00625b4517afb67c7c3 *data/geospiza.rda
8090f0e0c32765a2f2f797507f424769 *data/primates.rda
9274fd7108f725494eac630b89aa43a2 *data/whales.rda
ec8b8dbf4d1088584ad11dc260d18118 *inst/CITATION
c10257759658677259c157a7bd46795c *inst/doc/congruification.R
5d1e6df000371f6c69fea104f58f3ebf *inst/doc/congruification.Rnw
a280408d651d54fa9ce11208ad950056 *inst/doc/congruification.pdf
0eaf35ac61ed22aeb545eff9591f9384 *man/aov.phylo.Rd
1a6af01d0c76a9c86eee38ea85a2c5e0 *man/bd.ms.Rd
31655c83745058d688a6d8e0de54aa51 *man/calibrate.rjmcmc.Rd
2623978394c7a10d5813e345669b904d *man/congruify.phylo.Rd
90850dc6414b2fba56576387b047705f *man/dcount.Rd
5ac877ddbddb7e0a3df610e960280810 *man/drop.extinct.Rd
ea6fefcdaeb50de13075813189a722ee *man/dtt.Rd
b90514f4efc8769b60efbcee57785c50 *man/fitContinuous.Rd
7e1203187255730051d5606edc70a357 *man/fitDiscrete.Rd
36ad06d33fc85c0c811fea8c5b8e6c14 *man/gbresolve.Rd
761f855c8b59ecd6a005d43c5d4eab84 *man/geiger-data.Rd
319151badda88a8806ac1f2136f7b496 *man/geiger-defunct.Rd
74bfc22e335fddada7e0b6d5c7b14428 *man/geiger-examples.Rd
95da96b7b79c663b1c3f3ee27acbe3de *man/geiger-internal.Rd
128dc553198807fc1e0d555e2615af02 *man/geiger-package.Rd
88fe35b26cb0daf8c7556e2c0cd4b3ba *man/load.rjmcmc.Rd
9dc5e3eedba319f4819480bee2ebf2cf *man/make.gbm.Rd
be8892041de04309837809eddeb74a5f *man/medusa.Rd
b4a3cffead6085019775eb5fcd53ee90 *man/nodelabel.phylo.Rd
458bc5f6dd022dea131ca64b72984049 *man/plot.medusa.Rd
1a28be652ef4bee3f84b5ddb3f164dd2 *man/rc.Rd
6cbd3e562d424750350c54963ff83d17 *man/rjmcmc.bm.Rd
ee1711e0434ba66406cf9766d23037b7 *man/sim.bd.Rd
7d9d6a46209bb5cea9eed4096b50d6c4 *man/sim.bdtree.Rd
6fad2adee06194834d3c953b4ce60ccd *man/sim.char.Rd
decf76881476b7d38c85234bbbfe30b6 *man/subset.phylo.Rd
af8234d0b35459e0ed4fbf03dc58a19a *man/tips.Rd
18cdda39a1fc77156b47d4d00bcff7f9 *man/to.auteur.Rd
1596133af57fe1c30bc39e5e3433a042 *man/transform.phylo.Rd
41e1c34f1029c4a2f46bfc0d81a23acd *man/treedata.Rd
239a7ab33e95a7c5dadf2a447b6bdae3 *man/vcv.phylo.Rd
88c5da38b50ad85daa41cdf3029d5db3 *src/APE_reorder_phylo.c
182777d87c6288768b4b578a66672683 *src/Makevars
690552e395c37f6fcc1421c913c102a2 *src/Makevars.win
e7be3b4d2945110cb25035b71e8ea0c9 *src/branches.cpp
c97ffec273741438a0b959ecb2ff8bbd *src/mkn.c
9bea58817acffee5322e5162e920545b *src/mkn.h
646345ffeb7f1278bb4860513992ecde *src/pic.c
619165570485d9ed55293bbce93e390d *src/util.c
126a0df0c6425714a93a320fa4807ea5 *src/util.h
91438a5ddd73a60c404528dab6a080a8 *src/utilities.cpp
5d1e6df000371f6c69fea104f58f3ebf *vignettes/congruification.Rnw
